2062ab231ff Examples fixes (#370)
526c5b091fb More tests (#369)
aec42e23402 Hotfixes | diffLength and max compartments, rdesigneur+py3 etc, build system (#368)
6addb096430 More tests and some rearrangements (#363)

git-subtree-dir: moose-core
git-subtree-split: 2062ab231ff8fcc0644db4b5e054a3c571312bc2

Update README.md

Added binder.

2018 may20

e7786c7 cleanup with mutils
31e493c Objectedit: get color are now place in checkUtil which is now directed, kkit: crosscompartment destination pool is checked
4cee03c importing moose is changed
43a5ace When group is moved within another group, outer group is resize inturn compartmet is also resized
c424634 xfer cross compartment molecules are hidden and for cross compartment reaction's connection are now dotted line
8826af5 After collision is handled update of positionchanges is called
b375e56 group collision handled, model saving default is sbml,layout coordinates are updated with scenepos for further saving, when object is moved from one group to another message box is setout for confirmation
fec1496 coordinates for kkit with factor is done, spell corrected for CylcMesh to CylMesh
9b36f90 Lot of duplicate code removed, seperate function call made when filename or filepath is passed from the command line
33df033 Added model info QmessageBox
fd5dfa4 From the cmd line if a directory is passed, then Gui opens up the dialog file for the folder, window is resized to maximum width, clean warning message if filename or path is wrong
68270aa  one can close the messagebox if doesn't want to plot
1f2cb4c if object is moved from group/compartment to compartment/group confimation is required before moving
c29cede hen vertical or horizontal layout is applied for group, compartment size is recalculated
d76d66a Function moved to place other than parentpool location its pullback
d034823 color field is not editable for compartment, enzcplxpool and reaction
0a4b1ca compartment boundary is selected if its inside another compartment interior
02b9d39 comparment size is calculated based on group sceneBoundingRect
8dae832 kkitViewcontrol both the groups size are updated if moved from-to is different
44b53bc default: addSolver->mooseAddChemSolver, kkitViewcontrol: while rubberbandselection if entire group is selected then delete if partly selected then delete all the items under the selection
80b599f mgui: is popup exist then close, objectedit: objectwindowTitle is updated with name when changed, kkit: in positionChange all the neutral is updated with size, kkitViewcontrol:when moose object is moved from Compt/group to group/compartment then mooseobject path is set and for qgraphicalItem and qlineitem objects the parentItem is set which will be grpItem or comptItem

git-subtree-dir: moose-gui
git-subtree-split: e7786c7cb66ca1d78ea75473753464b723cc16d2

fe0a2ce Merge pull request #63 from upibhalla/master
8d0c500 Merge branch 'master' into master
f49a6ee Merge branch 'master' of https://github.com/upibhalla/moose-examples
6ef6d7b Fixes to ex7.2_CICR.py Now it oscillates properly again
09a1135 Merge pull request #60 from upibhalla/master
7ff52e3 Merge branch 'master' into master
9c7bdf6 Update README.md (#53)
d5768b0 Fixed CICRspineDend.g model to use the corrected scaling for ConcChans. Affects Rdesigneur ex8.1_synTrigCICR.py
8aece01 Added Rdesigneur tutorial ex7.6_func_controls_reac_rate.py

git-subtree-dir: moose-examples
git-subtree-split: fe0a2ce87288f266f3348a86f6d3849f68cebdf2

1b38d64 Merge pull request #356 from hrani/master
a5e0e95 Fixes to issue #360. Regression caused by #352 . (#361)
58292d6 Fix for typo in socket implementation. (#359)
d3c2c5f clean up with color conversion to hex values
473e29d function import was missing
a812045 Merge branch 'master' of http://github.com/hrani/moose-core
f723a63 getCordColor is unused function removing
1dfbbeb Merge branch 'master' into master
9c4458f HOTFIX #357 | Cleaning up HDF5 related macros in cmake. (#358)
9b8f038 converting dictionary compatible to python3
bfde5cc travis complaining of same function name
ddcbd4d adding pickle file rainbow2.pkl for mapping colors from genesis
2ea935b syntax cleanup
d9d36b8 cleanedup for python3 as well while loading pickle file
09d5239 readKkit.cpp : create annotator field for kinetic, readSBML.py: validator flag is set to on from true,groupname and groupid is passed, if both are missing then its not a valid sbml file, textcolor is set now, validator.py: added errormsg at validator, writeSBML.py: from chemconnectUtil getcolor is called and also group width and height is written if it comes from GUI, chemConnectUtil.py: getColor,validcolorcheck,getRandcolor moved from gui to core, writeKkit.py: text color might be a rgb which should go as string in kkit file, moose/utils.py: cleaned mooseaddchemsolver to mooseAddChemSolver, moose.py: solver is set if passed with moose.mooseReadSBML(), Annotator.h,cpp: added field height and width for group, rainbow.pkl added file
f227bb0 Travis Fix | Don't run streamer multitab tests on OSX/Travis. (#354)
a1a256b Efficient Network Streamer for MOOSE (#352)

git-subtree-dir: moose-core
git-subtree-split: 1b38d64f451a6b5b0d6caf610376d6ba3ba93cb6

2019 feb10

be8e726c82 Run apt update before starting build.
e8ac3227a7 Don't use xenial image.
e21ad2c752 Merge pull request #56 from dilawar/master
36593abcdf Merge branch 'master' into master
47769040dd Merge pull request #58 from upibhalla/master
a08b8cc372 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
253599de70 Added ephys6_dif_normalization.py.
961d989997 Merge branch 'master' into master
4ce6fe1eb7 Merge pull request #57 from upibhalla/master
a7ff7b3564 Updates to ephys5_channel_mixer, and to README
858c63221d Python3 is not must.
495bf1ed8b Hotfix to pyqt5 squid demo: See https://stackoverflow.com/q/9268786/1805129
bac47fd42d first pass on ephys5_channel_mixer.py
ce7a1f8b4f Merge branch 'master' of https://github.com/BhallaLab/moose-examples
866d523a29 Added ephys4 tutorial for sequence selectivity
cdeea31d42 Merge pull request #52 from upibhalla/master
aed438ddb3 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
13bd290e9d Update ephys2
4a8935f7e0 Enable pylint on examples. (#51)
739747a2ce Update README.md
e61c4d2b7b Fixed pylint produced error.
c5fb4c22b3 Use virtualenv path.
b2e77237ef Fixes to travis (#50)
2c70fc5a60 Merge pull request #49 from upibhalla/master
2e0d6a6733 Merge branch 'master' into master
61f54e1496 Print instruction if import fails or moose is was built without HDF5 support.
4c42a4474e Minor fixes to title and ephys2 example
73095f330c Merge branch 'master' of https://github.com/BhallaLab/moose-examples
77846d4de1 Cleanup of ephys3_synaptic_summation tutorial
a7b44dc4ab Major upgrades to ephys3 tutorial
72801a75ec Revert "Travis fix (#40)" (#48)
2448068c0f Travis fix (#40)
bb1dddf11c Added ephys3 tutorial for synaptic summation. Some cleanup of ephys1.
e30d87a637 Merge pull request #47 from BhallaLab/nml2
e350e8a801 Fixed path in script.
1602f54763 Added missing NML files and removed unneccessary files.
6d6c27e051 nml2 snippets.
3963e7969a Merge pull request #46 from upibhalla/master
4165c53e4a Merge branch 'master' of https://github.com/BhallaLab/moose-examples
2c0afa8fcc Clean up of ephys1 and ephys2 tutorials
9793e59f6c Merge branch 'master' of https://github.com/BhallaLab/moose-examples
2e91700547 Merge pull request #45 from upibhalla/master
7420933455 Added missing image file
70a3b3fc1c Test with python2.7, python3.6 and python3.7 .
bf6c180ee1 Use pypi nightly version to test.
075d01c1af Merge pull request #44 from upibhalla/master
13da78cfc0 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
e3cd31b515 Added Ephys demo for Rall's Law
2e12a9b42a Added squid demo with pyqt5.
410103e36a Use moose.element to get the element.
8f71469d17 Merge pull request #42 from upibhalla/master
77f6694e0e cleanup of some rdesigneur tutorials
9a6f8e214e Merge branch 'master' of https://github.com/BhallaLab/moose-examples
cc44a7e4fb Added demo for uniform spine placement, and putting them in a spiral
3a25620865 First commit for Electrophys tutorial directory
1502a55070 removed old script.
3b7a109b5e Merge branch 'master' of https://github.com/BhallaLab/moose-examples
4336dc3ae8 Fixed passiveDistrib argument list, got rid of unused '.' argument in a few examples
c5e895f30e Updated ex7.5 and README
9f95a87909 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
9ce8913fa5 Added 3 demos for dendritic transport

git-subtree-dir: moose-examples
git-subtree-split: be8e726c82d9bbc28711e0d62a3b13f762d126be

0f344909ae SO_REUSEPORT is not always defined. The build fails on centos-5 (#351)
441a66ba82 Issue 342 | TCP/UD Socket based Table Streamer (#345)
c67f8c0672 Travis build failure (#350)
053e256d76 Merge pull request #348 from analkumar2/master
a165432ed2 Corrected the K_AHP z gate and make_Ca y gate
c38c64380f Dec 19 | continuation of NML2 fixes (#344)
e93d391be4 Hotfix: Neuroml2 fixes (#343)
1e426a2c16 Update INSTALL.md
2624d4b190 Continuation to PR #308 (#340)
0997a4623f Merge pull request #341 from hrani/master
4dfac333a3 using existing restoreXreacs function to remove _xfer_ objects before writting into SBML and genesis files
ed7c4d58c3 Merge pull request #339 from upibhalla/master
1b48ce7ff7 Fix to CaConc to factor in valence of 2. Update to rdesigneur to handle SBML files
3aa66d4d34 Merge pull request #338 from hrani/master
356f43ce72 reading and writing diff and motor constant for pool
d6e5711a27 Merge pull request #335 from hrani/master
fac76ad723 groups and subgroups are written to sbml and read from xml files
69f9f33c38 Merge branch 'master' into master
169d0c88b2 Merge pull request #336 from upibhalla/master
d57fa1de92 Merge branch 'master' of https://github.com/BhallaLab/moose-core
b9a51133a3 Fix to Im calculation in HSolve, to include external channels like receptors. Also fix to Neuron.cpp for setting channelDistribution, to always load Ca_concs first, to ensure that any dependent channels are able to find them.
6868716b40 Merge branch 'master' into master
189778c8cd Merge pull request #331 from dilawar/master
7423c39e3b Merge branch 'master' into master
1a9b0f54df Merge branch 'master' into master
23906e50e5 searching for _xfer_
c40c622c0c xref pool are not wirtten and cleaned up if part of Reaction/Enzyme or notes, group are checked under all the mesh
01ebb8461e Merge pull request #333 from hrani/master
d72ad63fc5 Merge branch 'master' of http://github.com/hrani/moose-core
0cd028c047 Added other meshes while searching for groups
2189993593 Merge branch 'master' into master
97913222e9 Reading and creating CylMesh and EndoMesh if specified in the Annotation field
4d1337ae68 Merge branch 'master' of github.com:dilawar/moose-core
f6c4ab39cc Merge pull request #330 from hrani/master
26e966284f Tweaks.
90c97b6599 Fixed the bug caused by previous two commits. Now I need to make sure that ca pool is read at each timepoint.
86522d326e Using built in logging library.
b327ec7d39 xfer cross compartment molecules are not written as species and also for Reaction and Enzyme
e5fbf8c5db For CylMesh, totLength and diffLength is written to Annotation to get number of voxel
d569f56a39 gate with id z is loaded into gateZ in moose now.
b38a4405ae Squashed commit of the following:
ef8e54a15b variable name used in before assignment cleanup
740a7a65b9 CylMesh,EndoMesh,NeuroMesh compartment are written to SBML as compartment with annotation field in which surround,isMembraneBound,numDiffCompts

git-subtree-dir: moose-core
git-subtree-split: 0f344909ae285b147b4bc61089b8ee52aa6b9186

Update README.md

Update install.rst

Periodic merge of subprojects : Nov 11, 2018

e5868beb9 Merge pull request #329 from upibhalla/master
a56b7e883 Fix to rdesigneurProtos so that the classic HH Na and K_DR channels now work properly.
0bdebdf6f Merge pull request #328 from upibhalla/master
bc3ff9ccd Got rid of printf debug line
788bce98b Merge branch 'master' of https://github.com/upibhalla/moose-core
b8eeb9d5f Merge branch 'master' of https://github.com/BhallaLab/moose-core
47ee21c36 Fixes to rdesigneur so that chemProto without chemDistrib will not fail confusingly.
50f03b860 Fixes to EndoMesh (#327)
552ca01a1 Merge branch 'master' into master
905c98332 Merge pull request #323 from hrani/master
aca01be2e Fixed numDimentions to 3
12e429d47 Merge branch 'master' of https://github.com/BhallaLab/moose-core
1f91c76fc Added dummy CubeMesh as default parent for EndoMesh to avert segvs on several methods
5a8ec044e Merge branch 'master' into master
e4c19935e Merge pull request #324 from upibhalla/master
0327eb9e7 Fixed test_Xchan1.py to match bugfix for Dsolve.
2e2227649 Merge branch 'master' of https://github.com/BhallaLab/moose-core
182e95c52 Bugfix for ConcChan to correct scaling for permeability to SI units of millimolar
865e99dbb Merge branch 'master' of http://github.com/hrani/moose-core
70f116ad9 cleanup in print statement
83afd0fe3 Merge branch 'master' into master
9b0569b93 while reading the sbml model validator can be switched off
5b0bbe1be Merge pull request #322 from hrani/master
05eba8faa Channel are written back to genesis and zeroth voxel moose object is written for both cubeMesh or CylMesh
53cbe3656 reading info field for channel from kkit file (#321)
ba88932fb CylMesh are written to SBML with annotation field and only zeroth ele… (#318)
f917df152 Merge pull request #319 from dilawar/master
637583439 Works after disabling alpha and beta properties.
0b208c8c9 Now user can pass verbose option to mooseReadNML2
556ebef64 Hotfix. If self.network not found, sett the temperate to 25 deg C.
7c86d4ebc Merge branch 'master' of https://github.com/BhallaLab/moose-core
3a655cd06 Minor typo in warning report for Dsolve
b4637b21a Merge pull request #317 from upibhalla/master
d6e35de32 Merge branch 'master' into master
ecfca8401 Update README.md (#312)
f66ba9003 Merge branch 'master' of https://github.com/BhallaLab/moose-core
51dd77625 Rdesigneur passiveDistrib modified to handle legacy commands
5d20e0433 corrected the spell of CyclMesh-->CylMesh, negating the yaxis for kkit is corrected as now saving the value of scene coOrdinates (#313)
a8769f2c4 Update CMakeLists.txt
f0e4db0e9 Fixes to build failure on OSX because cmake does not MACOSX but APPLE on (#316)
2fb51c9a5 Hotfix: Neuroml2 fixes. (#315)
e46429530 Merge pull request #314 from upibhalla/master
b57a6d0df Merge branch 'master' into master
d2749931d Build System Tweaks  (#309)
293d44144 Some fixes to Ca-dependent channel prototypes in rdesigneur.
88bcf0797 Merge pull request #311 from upibhalla/master
aaf589ab2 Merge branch 'master' of https://github.com/BhallaLab/moose-core
0909ceb32 Fixes as suggested by PyLint. Added a target pylint in cmake file. (#308)
cdbf917b2 Merge branch 'master' of https://github.com/BhallaLab/moose-core
79e2d65f5 hotfix for running Boost, Added NMDAR to rdesigneurProtos.
eb4e83662 Fixed boost segfault with dense solver.  Also remove GSL specific attrib from the test. (#310)
8463cc73e Update setup.cmake.py (#307)
8c38fc6d6 Removed deprecated warnings from neuroml2 reader (#305)
6df4332d2 Fixes to BOOST based steadystate solver (#306)
99dd7d250 Merge pull request #302 from BhallaLab/chhennapoda
86c424452 Merge branch 'master' into chhennapoda
ec06b242a HotFix: Fix regression in StreadyState solver caused by #293. (#304)
6b79f6701 prefer .so suffix over CPython version specific suffix . this way a wheel compiled by any version of python3 will work with any python3.
92da6a7fb removed python-libsbml from install dependencies; added matplotlib. sbml and neuroml packages should be installed by user and not automatically. They may not be available for all distribution of python on all OSes.
e2bc19c0e Merge branch 'master' into chhennapoda
385a5cf0a Merge pull request #303 from upibhalla/master
080767c5a Fixes to rdesigneur due to bad merge. Cleanup on rmoogli
62f8bc89e Tweak to Neuron.cpp so it can handle insertion of spines with uniform spacing.
b6088109b Fixes for linux.
406fee2a0 Temp commit to test on OSX.
cc3c604b9 Merge branch 'master' into chhennapoda
342092829 Update moose_test.py (#301)
61f4f6684 show timeout in moose.test() .
abf822c4a with python2, just test with GSL. Build python3 first.
088c61673 Made changes to build system so that pymoose directory can be built in isolation. Build system is bit more module. Ideally I should make sure that each subdirectory can built in isolation.
3c0ff2790 Few changes to build with python3.6.
5d688f63d Use option --relative in setup.py and tell cmake not to look into usr prefix anymore.
1f3fe9fc3 Merge branch 'chhennapoda' of github.com:BhallaLab/moose-core into chhennapoda
3e19983c8 removed unneeded library which is never used.
c2fbab872 cmake related changes to build on centos5 (manylinux docker image).
f1230f151 Merge branch 'master' of https://github.com/upibhalla/moose-core
23a2892cc Merge branch 'master' of https://github.com/BhallaLab/moose-core
8a835c133 minor bugfix to rdesigneur
6ef1d567e Merge branch 'master' into master
a9a2e758f Merge branch 'master' of https://github.com/BhallaLab/moose-core
5e1294d99 Further updates to rdesigneur for argument handling
a702bded5 Put in kwargs based specification of plotList, stimList and moogList. Folded savePlots into plotList but not yet tested.

git-subtree-dir: moose-core
git-subtree-split: e5868beb97afcb778d6a945c38e80300c953b39a

uploaded updated Rdesignuer files from Upi

* Pull subtree to master branch.

* Squashed 'moose-core/' changes from d229eba6bb..b4637b21a0

b4637b21a0 Merge pull request #317 from upibhalla/master
d6e35de324 Merge branch 'master' into master
ecfca84012 Update README.md (#312)
f66ba90038 Merge branch 'master' of https://github.com/BhallaLab/moose-core
51dd776253 Rdesigneur passiveDistrib modified to handle legacy commands
5d20e04333 corrected the spell of CyclMesh-->CylMesh, negating the yaxis for kkit is corrected as now saving the value of scene coOrdinates (#313)
a8769f2c48 Update CMakeLists.txt
f0e4db0e98 Fixes to build failure on OSX because cmake does not MACOSX but APPLE on (#316)
2fb51c9a56 Hotfix: Neuroml2 fixes. (#315)
e46429530f Merge pull request #314 from upibhalla/master
b57a6d0df0 Merge branch 'master' into master
d2749931d0 Build System Tweaks  (#309)
293d441443 Some fixes to Ca-dependent channel prototypes in rdesigneur.
88bcf0797c Merge pull request #311 from upibhalla/master
aaf589ab23 Merge branch 'master' of https://github.com/BhallaLab/moose-core
0909ceb328 Fixes as suggested by PyLint. Added a target pylint in cmake file. (#308)
cdbf917b21 Merge branch 'master' of https://github.com/BhallaLab/moose-core
79e2d65f58 hotfix for running Boost, Added NMDAR to rdesigneurProtos.
eb4e836623 Fixed boost segfault with dense solver.  Also remove GSL specific attrib from the test. (#310)
8463cc73e5 Update setup.cmake.py (#307)
8c38fc6d60 Removed deprecated warnings from neuroml2 reader (#305)
6df4332d2d Fixes to BOOST based steadystate solver (#306)
99dd7d2503 Merge pull request #302 from BhallaLab/chhennapoda
86c4244522 Merge branch 'master' into chhennapoda
ec06b242ae HotFix: Fix regression in StreadyState solver caused by #293. (#304)
6b79f6701c prefer .so suffix over CPython version specific suffix . this way a wheel compiled by any version of python3 will work with any python3.
92da6a7fb8 removed python-libsbml from install dependencies; added matplotlib. sbml and neuroml packages should be installed by user and not automatically. They may not be available for all distribution of python on all OSes.
e2bc19c0e4 Merge branch 'master' into chhennapoda
385a5cf0a1 Merge pull request #303 from upibhalla/master
080767c5aa Fixes to rdesigneur due to bad merge. Cleanup on rmoogli
62f8bc89e0 Tweak to Neuron.cpp so it can handle insertion of spines with uniform spacing.
b6088109bf Fixes for linux.
406fee2a06 Temp commit to test on OSX.
cc3c604b9f Merge branch 'master' into chhennapoda
342092829c Update moose_test.py (#301)
61f4f66843 show timeout in moose.test() .
abf822c4a6 with python2, just test with GSL. Build python3 first.
088c61673c Made changes to build system so that pymoose directory can be built in isolation. Build system is bit more module. Ideally I should make sure that each subdirectory can built in isolation.
3c0ff27903 Few changes to build with python3.6.
5d688f63d8 Use option --relative in setup.py and tell cmake not to look into usr prefix anymore.
1f3fe9fc35 Merge branch 'chhennapoda' of github.com:BhallaLab/moose-core into chhennapoda
3e19983c83 removed unneeded library which is never used.
c2fbab8726 cmake related changes to build on centos5 (manylinux docker image).
f1230f1518 Merge branch 'master' of https://github.com/upibhalla/moose-core
23a2892cc8 Merge branch 'master' of https://github.com/BhallaLab/moose-core
8a835c1332 minor bugfix to rdesigneur
6ef1d567ec Merge branch 'master' into master
a9a2e758ff Merge branch 'master' of https://github.com/BhallaLab/moose-core
5e1294d991 Further updates to rdesigneur for argument handling
a702bded54 Put in kwargs based specification of plotList, stimList and moogList. Folded savePlots into plotList but not yet tested.

git-subtree-dir: moose-core
git-subtree-split: b4637b21a04e37e3358867c2327d636369990e15

* Pull subtree to master branch.

* Squashed 'moose-core/' changes from d229eba6bb..8463cc73e5

8463cc73e5 Update setup.cmake.py (#307)
8c38fc6d60 Removed deprecated warnings from neuroml2 reader (#305)
6df4332d2d Fixes to BOOST based steadystate solver (#306)
99dd7d2503 Merge pull request #302 from BhallaLab/chhennapoda
86c4244522 Merge branch 'master' into chhennapoda
ec06b242ae HotFix: Fix regression in StreadyState solver caused by #293. (#304)
6b79f6701c prefer .so suffix over CPython version specific suffix . this way a wheel compiled by any version of python3 will work with any python3.
92da6a7fb8 removed python-libsbml from install dependencies; added matplotlib. sbml and neuroml packages should be installed by user and not automatically. They may not be available for all distribution of python on all OSes.
e2bc19c0e4 Merge branch 'master' into chhennapoda
385a5cf0a1 Merge pull request #303 from upibhalla/master
080767c5aa Fixes to rdesigneur due to bad merge. Clean...

* Squashed 'moose-core/' changes from d229eba6bb..ec06b242ae

ec06b242ae HotFix: Fix regression in StreadyState solver caused by #293. (#304)
385a5cf0a1 Merge pull request #303 from upibhalla/master
080767c5aa Fixes to rdesigneur due to bad merge. Cleanup on rmoogli
62f8bc89e0 Tweak to Neuron.cpp so it can handle insertion of spines with uniform spacing.
342092829c Update moose_test.py (#301)
f1230f1518 Merge branch 'master' of https://github.com/upibhalla/moose-core
23a2892cc8 Merge branch 'master' of https://github.com/BhallaLab/moose-core
8a835c1332 minor bugfix to rdesigneur
6ef1d567ec Merge branch 'master' into master
a9a2e758ff Merge branch 'master' of https://github.com/BhallaLab/moose-core
5e1294d991 Further updates to rdesigneur for argument handling
a702bded54 Put in kwargs based specification of plotList, stimList and moogList. Folded savePlots into plotList but not yet tested.

git-subtree-dir: moose-core
git-subtree-split: ec06b242ae650f413d50b9c22b76381a94efcba4

* Squashed 'moose-examples/' changes from 2d9849222d..e30d87a637

e30d87a637 Merge pull request #47 from BhallaLab/nml2
e350e8a801 Fixed path in script.
1602f54763 Added missing NML files and removed unneccessary files.
6d6c27e051 nml2 snippets.
3963e7969a Merge pull request #46 from upibhalla/master
4165c53e4a Merge branch 'master' of https://github.com/BhallaLab/moose-examples
2c0afa8fcc Clean up of ephys1 and ephys2 tutorials
9793e59f6c Merge branch 'master' of https://github.com/BhallaLab/moose-examples
2e91700547 Merge pull request #45 from upibhalla/master
7420933455 Added missing image file
70a3b3fc1c Test with python2.7, python3.6 and python3.7 .
bf6c180ee1 Use pypi nightly version to test.
075d01c1af Merge pull request #44 from upibhalla/master
13da78cfc0 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
e3cd31b515 Added Ephys demo for Rall's Law
2e12a9b42a Added squid demo with pyqt5.
410103e36a Use moose.element to get the element.
8f71469d17 Merge pull request #42 from upibhalla/master
77f6694e0e cleanup of some rdesigneur tutorials
9a6f8e214e Merge branch 'master' of https://github.com/BhallaLab/moose-examples
cc44a7e4fb Added demo for uniform spine placement, and putting them in a spiral
3a25620865 First commit for Electrophys tutorial directory
1502a55070 removed old script.
3b7a109b5e Merge branch 'master' of https://github.com/BhallaLab/moose-examples
4336dc3ae8 Fixed passiveDistrib argument list, got rid of unused '.' argument in a few examples
c5e895f30e Updated ex7.5 and README
9f95a87909 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
9ce8913fa5 Added 3 demos for dendritic transport

git-subtree-dir: moose-examples
git-subtree-split: e30d87a6374107d7f0494587dd3d868a22a58e20

* Squashed 'moose-gui/' changes from d226931e0b..c29cede420

c29cede420 hen vertical or horizontal layout is applied for group, compartment size is recalculated
d76d66af1d Function moved to place other than parentpool location its pullback
d03482329c color field is not editable for compartment, enzcplxpool and reaction
0a4b1cab43 compartment boundary is selected if its inside another compartment interior
02b9d3964f comparment size is calculated based on group sceneBoundingRect
8dae832c35 kkitViewcontrol both the groups size are updated if moved from-to is different
44b53bc56d default: addSolver->mooseAddChemSolver, kkitViewcontrol: while rubberbandselection if entire group is selected then delete if partly selected then delete all the items under the selection
80b599f85d mgui: is popup exist then close, objectedit: objectwindowTitle is updated with name when changed, kkit: in positionChange all the neutral is updated with size, kkitViewcontrol:when moose object is moved from Compt/group to group/compartment then mooseobject path is set and for qgraphicalItem and qlineitem objects the parentItem is set which will be grpItem or comptItem

git-subtree-dir: moose-gui
git-subtree-split: c29cede4201bd25dfe868aaaa9d227ea455410ae

* Build using Travis.

* Scripts to test OSX and Linux packages.

* Pull from branch chhennapoda.

* No clang.

* Made scripts executable.

* New version.

* Squashed 'moose-core/' changes from d229eba..406fee2

406fee2 Temp commit to test on OSX.
cc3c604 Merge branch 'master' into chhennapoda
3420928 Update moose_test.py (#301)
61f4f66 show timeout in moose.test() .
abf822c with python2, just test with GSL. Build python3 first.
088c616 Made changes to build system so that pymoose directory can be built in isolation. Build system is bit more module. Ideally I should make sure that each subdirectory can built in isolation.
3c0ff27 Few changes to build with python3.6.
5d688f6 Use option --relative in setup.py and tell cmake not to look into usr prefix anymore.
1f3fe9f Merge branch 'chhennapoda' of github.com:BhallaLab/moose-core into chhennapoda
3e19983 removed unneeded library which is never used.
c2fbab8 cmake related changes to build on cen...

d229eba6bb Parallel solvers (#293)

git-subtree-dir: moose-core
git-subtree-split: d229eba6bbc957c97bac44d24d513543956942c1

the test.