Problems loading .p file
Created by: subhacom
These files are generated by neuroConstruct. Rm and Cm aren't being picked up from attached *.p file. Error on readcell:
Warning: Ignored attempt to set Ra of compartment Soma to less than 1e-15 Warning: Ignored attempt to set Cm of compartment Soma to less than 1e-15
Also throws error at reset:
Error: Neutral::create: class HSolve not found moose: Cell.cpp:272: void Cell::setupSolver(const Id&, const Id&) const: Assertion `integ != 0' failed. Aborted
Reported by: *anonymous
Activity
Created by: subhacom
Logged In: YES user_id=1735678 Originator: NO
Warning: Ignored attempt to set Ra of compartment Soma to less than 1e-15 Warning: Ignored attempt to set Cm of compartment Soma to less than 1e-15
- these warnings are appearing because MOOSE is assuming the start of the compartment (x0,y0,z0) = (0, 0, 0) and the end of the compartment (x, y, z) is what is specified in the Soma line, which again is (0,0,0) - so the length of the compartment Soma becomes 0. If we make the soma line:
Soma none 10.0 0.0 0.0 16.0 NaConductance 1200.0 KConductance 360.0
Then it gives the soma a length of 10 um and the above warning does not appear. Also in the version downloaded on 7 May(Last Changed Rev: 469), the error:
Error: Neutral::create: class HSolve not found
does not appear. File Added: SampleCell.p
Original comment by: subhacom
Created by: subhacom
Logged In: YES user_id=1735678 Originator: NO
The problem with spherical compartment has been fixed in revision:473 Until HSolve is not fixed it is best to turn off the solver. You do this by setting the "method" field in the Cell container to "ee". In this particular case, this is the command:
setfield cells/SampleCellGroup/SampleCellGroup_0 method ee
Original comment by: subhacom
