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  1. May 26, 2021
  2. May 19, 2021
    • Benjamin Cumming's avatar
      Add Fujitsu ARM-SVE CI test (#1512) · 1d8e799f
      Benjamin Cumming authored
      Add a CI test for ARM-SVE
      
      - compiles and runs the unit tests with vectorization enabled for the `armv8.2-a+sv` architecture
      - uses a dedicated gitlab runner on ault.cscs.ch
      
      Fixes #1498
      1d8e799f
  3. May 18, 2021
  4. May 17, 2021
  5. May 10, 2021
  6. May 04, 2021
  7. May 03, 2021
  8. Apr 29, 2021
  9. Apr 23, 2021
  10. Apr 22, 2021
  11. Apr 21, 2021
  12. Apr 20, 2021
  13. Apr 14, 2021
  14. Apr 12, 2021
  15. Apr 08, 2021
    • Sam Yates's avatar
      Add phase parameter to current clamps. (#1474) · 05569a16
      Sam Yates authored
      * `i_clamp` constructors take new optional phase argument.
      * Pulse or box envelope clamps are now provided by the static method `i_clamp::box`, taking onset, duration, and amplitude parameters.
      * Bump pybind11 version so we can have keyword-only arguments in the Python API.
      * Make frequency and phase keyword-only arguments to Python `iclamp`.
      * Change frequency units for clamps from Hz to kHz for consistency with other interfaces.
      
      Fixes #1454.
      05569a16
  16. Apr 06, 2021
    • Benjamin Cumming's avatar
      Update NEURON-style swc reader (#1475) · 00fd01b6
      Benjamin Cumming authored
      * update and simplify the `load_swc_neuron` reader to match the simplified and more correct interpretation in NEURON 8
      * update the documentation on the interpretation, and add details about how it still differs from the neuromorpho descriptions. 
      * update unit tests to reflect new interpretation
      * add a unit test that reproduces a complex case from the NEURON test suite.
      * remove the `load_swc_allen` C++ and Python calls
      * add links to NeuroMorpho site in the documention
      
      Fixes #1445.
      00fd01b6
    • Benjamin Cumming's avatar
      Clarify Python installation from CMake (#1413) · 0c3ce90f
      Benjamin Cumming authored
      Always install Python module inside CMAKE_INSTALL_PREFIX, unless the user explicitly sets the ARB_PYTHON_LIB_PATH CMake variable.
      
      Update documentation on installing and building the Python packing using CMake to have a detailed example of how to install the Python module inside a virtual env.
      
      Fixes #1403
      0c3ce90f
    • Brent Huisman's avatar
      Assorted docs fixes (#1471) · 334830ae
      Brent Huisman authored
      * Correct the installation page.
      * Custom css is not supported by theme, so a css snippet improving table formatting was moved to the theme css.
      * Non cable-cell concept docs were wrong, improved formatting
      * Some typos
      
      Co-authored-by: @clinssen 
      334830ae
  17. Apr 02, 2021
    • Benjamin Cumming's avatar
      Add spack package file to the repository (#1466) · 3af49ac1
      Benjamin Cumming authored
      Replicate the spack `package.py` from the main spack repository into the arbor repo.
      
      Some small updates were made:
      - Correctly provide a url for the GitHub tagged release
      - Specify minimum pybind11 version 2.6
      
      Fixes #1465 
      3af49ac1
  18. Apr 01, 2021
  19. Mar 31, 2021
    • Nora Abi Akar's avatar
      Arbor Cable-Cell Format (ACC) (#1423) · 96d961ac
      Nora Abi Akar authored
      * Implements parsers and writers in `arborio` for the s-expression based Arbor Cable-Cell Format defined in #1336.
      * Moves `s_expr.hpp` to the public interface.
      * Adds python wrappers to support the features in pyarb.  
      * Adds unit tests.
      * Adds docs.
      
      Fixes #1336
      Partially addresses #1233
      96d961ac
  20. Mar 30, 2021