Update NEURON-style swc reader (#1475)
* update and simplify the `load_swc_neuron` reader to match the simplified and more correct interpretation in NEURON 8 * update the documentation on the interpretation, and add details about how it still differs from the neuromorpho descriptions. * update unit tests to reflect new interpretation * add a unit test that reproduces a complex case from the NEURON test suite. * remove the `load_swc_allen` C++ and Python calls * add links to NeuroMorpho site in the documention Fixes #1445.
Showing
- arborio/include/arborio/swcio.hpp 1 addition, 48 deletionsarborio/include/arborio/swcio.hpp
- arborio/neurolucida.cpp 3 additions, 1 deletionarborio/neurolucida.cpp
- arborio/swcio.cpp 99 additions, 278 deletionsarborio/swcio.cpp
- doc/cpp/morphology.rst 8 additions, 14 deletionsdoc/cpp/morphology.rst
- doc/fileformat/swc.rst 57 additions, 36 deletionsdoc/fileformat/swc.rst
- doc/python/morphology.rst 9 additions, 48 deletionsdoc/python/morphology.rst
- python/morphology.cpp 3 additions, 55 deletionspython/morphology.cpp
- test/unit/test_swcio.cpp 174 additions, 490 deletionstest/unit/test_swcio.cpp
Please register or sign in to comment