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  1. Nov 27, 2020
  2. Nov 23, 2020
    • Nora Abi Akar's avatar
      Docs: Cell kind and description (#1227) · 9ab86402
      Nora Abi Akar authored
      * Modify `cell kind` concept docs.
      * Add `cell description` concept docs.
      * Reorder the docs so that the recipe, cell kind and description, interconnectivity, hardware management, domain decomposition, and simulation are consecutive. Then start the more detailed cable cell docs. 
      9ab86402
  3. Nov 19, 2020
  4. Nov 18, 2020
    • thorstenhater's avatar
      Add readme to examples. (#1228) · 9233b784
      thorstenhater authored
      * Add a readme for the C++ examples
      * Improved readme for dryrun
      
      Fixes #868, #1107.
      9233b784
    • Sam Yates's avatar
      Expose diverse probes in Python API. (#1225) · 1bfe96bc
      Sam Yates authored
      Major changes in Python library and documentation:
      
      * Add global state (immutable after initialization) for the Python module that
        manages the mapping between probe metadata types and the method by which the
        corresponding [sample data can be collected and presented as Python objects.
        This is necessary for decoupling the implementation of the simulation wrapper
        from that of the various cable cell probe types.
      
      * Wrap each of the C++ cable cell probe types with a Python function that
        returns a `probe_info` object.
      
      * Add code for converting and accumulating C++ probe metadata and sample
        data, registered in the module global state against the metadata type info.
      
      * Make the `arbor.simulator` object responsible for recording all spike and
        sample data, with corresponding new methods.
      
      * Use NumPy arrays and structured datatypes for returning spike and
        sample data.
      
      * Place Python schedule proxies under an abstract interface so tha...
      1bfe96bc
  5. Nov 17, 2020
  6. Nov 13, 2020
  7. Nov 11, 2020
  8. Nov 10, 2020
  9. Nov 09, 2020
  10. Nov 06, 2020
  11. Nov 05, 2020
    • Nora Abi Akar's avatar
      Modify SWC loaders (#1214) · 594a365f
      Nora Abi Akar authored
      * Rename `as_segment_tree` to `load_swc_arbor`.
      * Remove `swc_mode`: `sort_and_validate_swc` now performs the `relaxed` checks by default, `load_swc_arbor` performs the `strict` checks. 
      * Change `load_swc_xxx` to only accept `swc_data` as an argument
      * Remove default constructor for `swc_data` and enforce validation of SWC records via `sort_and_validate_swc` at construction.
      * Add fixes for docs and unit tests.
      594a365f
  12. Nov 02, 2020
  13. Nov 01, 2020
  14. Oct 28, 2020
  15. Oct 15, 2020
  16. Oct 14, 2020
  17. Oct 09, 2020
  18. Oct 08, 2020
  19. Oct 07, 2020