* Build using Travis.

* Scripts to test OSX and Linux packages.

* Pull from branch chhennapoda.

* No clang.

* Made scripts executable.

* New version.

* Squashed 'moose-core/' changes from d229eba..406fee2

406fee2 Temp commit to test on OSX.
cc3c604 Merge branch 'master' into chhennapoda
3420928 Update moose_test.py (#301)
61f4f66 show timeout in moose.test() .
abf822c with python2, just test with GSL. Build python3 first.
088c616 Made changes to build system so that pymoose directory can be built in isolation. Build system is bit more module. Ideally I should make sure that each subdirectory can built in isolation.
3c0ff27 Few changes to build with python3.6.
5d688f6 Use option --relative in setup.py and tell cmake not to look into usr prefix anymore.
1f3fe9f Merge branch 'chhennapoda' of github.com:BhallaLab/moose-core into chhennapoda
3e19983 removed unneeded library which is never used.
c2fbab8 cmake related changes to build on cen...

d229eba6bb Parallel solvers (#293)

git-subtree-dir: moose-core
git-subtree-split: d229eba6bbc957c97bac44d24d513543956942c1

the test.

test.

d226931e0b while deleting the group a warning box is set,deleteSolve is now mooseDeleteChemSolver, while saving to sbml model scenepos is picked up, hopefully this works for others. Tested for single compartment multiple group
c1a3949a3e adding/deleting the solvers are picked from the python/chemUtil folder instead of local setsolver file and addsolver is now mooseAddChemSolver
2f8fcab25f in disableModel function added dsolve also
b4d5376ae8 From command line if filename is passed it load into moose-gui
a82842f683 group border color can be editable
395d5f0a9c if moose object is moved from compartment to group or from group to another group/compartment, then mooseobject path and qt object parentItem are updated

git-subtree-dir: moose-gui
git-subtree-split: d226931e0b932407ecea7863588b1f3d9e8721a7

2d9849222d Add 3 new demos for rdesigneur (#41)
f25999106c update sbml file to store scenepos
2f78a07958 Fixed testHSolve script.
c537773939 Use python based relpath. The realpath utility is too old on travis.
5dbee3920d Merge pull request #39 from upibhalla/master
5a2af75f90 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
fda496c533 minor fix to scaleVolumes demo
0fe42549ce Added ex8.1 for CICR in a multiscale model. Some updates to ex8.2 and the README
2e1b2035f4 Added rdesigneur tutorial for synaptic-input triggered CICR
59a458b611 Fix to units for permeability for ConcChan, affects ex7.2_CICR.py
2b026c5ab5 Updated some demos, added new ex7.2 which demonstrates CICR, endo-compartments, and the operation of ConcChans.
a6adb6acc1 mooseaddChemSolver changed to mooseAddChemSolver, commented buildXreac and filterXreac
27855bb699 Renamed the file. First argument takes the method name.
12f57e76ba Update test_ksolve_lsode.py
63...

d5b330dc02 Merge pull request #296 from hrani/master
5a606df86c Merge remote-tracking branch 'upstream/master'
ce545cf507 Rdesigneur updates (#295)
9869046490 Merge branch 'master' into master
753b189063 changes made after fixXreacs is moved from python to python/moose for package
5eca1a3620 moved fixXreacs.py from python to python/moose for packaging, changes made to get fixXreacs files
3a519cec39 mooseAddChemSolver and mooseDeleteChemSolver is meant for chemical models only (#292)
9ba0e85532 check for enz parent is done by neighbors['enzDes'] rather than enz.parent and if enzyme parent is not pool then raise an exception
161c475e2c Merge branch 'master' into master
f9d869da24 Merge pull request #294 from upibhalla/master
a76dd524b4 Merge branch 'master' of https://github.com/BhallaLab/moose-core
c0d5ba6d9b Added plot y limits to rdesigneur
5fa7226e60 clean up modelRoot while printing
3c6972aae3 mooseAddChemSolver and mooseDeleteChemSolver is mea...

Use system python to load moose package on travis.

Related to moving out Rdesignuer from cookbook as a seperate section add files and update Rdes.rst and related images which is updated by Upi

1271dcd Merge pull request #278 from upibhalla/master
c400af3 Minor extension to rdesigneur to handle display of the passive electrical parameters of compartments: Rm, Ra, Cm. These will be scaled if spine geometry changes.
a77c611 Fixes to rdesigneur for NeuroMesh models. Key bugfix to Dsolve for NeuroMesh models. Some code cleanup to eliminate compiler warnings about uninitialized variables.
840021f Added lots of channel prototypes to rdesigneurProtos. Small fixes to rdesigneur for multiscale models.
c4f9fa5 Updates to Rdesigneur to handle synaptic input stimulus. Modified RandSpike with a doPeriodic flag, so it can be used for periodic stimuli as well.
cb2dd4b Merge branch 'master' of https://github.com/BhallaLab/moose-core
fc6ca10 Updates to rdesigneur to handle voltage clamp specification as a stimulus. Added doEvalAtReinit flag to Function so that it can initialize at a precomputed value rather than zero.
0445da5 Merge pull request #276 from upibhalla/master
48d1d4c Updates to rdesigneur to handle soma parameters and ball-and-stick model in cellProto argument
694fe5e Merge branch 'master' of https://github.com/BhallaLab/moose-core
180109a Changed Enz number-rate scaling to use the volume of the enzyme molecule, rather than the volume of the substrate. This usage gives results consistent with Genesis/kkit
f9de66e Merge pull request #273 from upibhalla/master
c2d1a6f Fixed grotesque bug with Dsolve.cpp which manifested only if pool names were of length 13 and they were diffusing.
b9448c0 Merge branch 'master' of https://github.com/BhallaLab/moose-core
bcd9ddb Fixes to Enz so that kcat of zero doesn't set up NaNs in Km and K1. Display updates to rdesigneur, rmoogli, moogul.
eeea183 Merge pull request #270 from upibhalla/master
5e840d2 Merge branch 'master' into master
9ac8d79 Merge pull request #272 from BhallaLab/dilawar-patch-2
8f276ef Update travis_prepare_osx.sh
2d00294 Update rmoogli.py
5e793c3 Update moogul.py
5108d7e Update rmoogli.py
42a4f3b Merge branch 'master' of https://github.com/BhallaLab/moose-core
8ea8b2e Fixes to moogli when run from outside the rdesigneur directory
c411242 minor cleanup on rdesigneur
ea99dcc Updated version of moogul, integrated now with rdesigneur
d81e796 Merge pull request #264 from hrani/master
bf0119b Update test_negative_value_flag.py
6e71d8e Update test_kkit.py
fdc7d66 cleaned up print stm
51dfc2c cleaned up print stm
b055a5c cleaned up wrt to python3 compilation problem
09da84b indentation corrected
00bc557 indentation corrected
b55acd9 Cleaned wrt to diffusion,clean up to remove in ReadKKit removed the setting up of solver, in mooseaddsolver() cleaned up in setting and deleting the solver, added utils.loadmodel function to call loadmodel function with setting for solver
9441bf9 Merge branch 'master' into master
08f0804 Merge pull request #266 from upibhalla/master
0ad961c Update rdesigneur.py
3ec65d7 Update rdesigneur.py
b6b58a4 Moved fixXreacs.py from python/rdesigneur directory to python directory
736f7f5 Merge branch 'master' of https://github.com/BhallaLab/moose-core
38a1d03 Bugfix for fixXreacs so that it works properly if there was already some text in the notes.
b8fcd11 Merge branch 'master' of http://github.com/hrani/moose-core
ad6925f Merge branch 'master' of https://github.com/BhallaLab/moose-core
9d5be9d Merge branch 'master' into master
cc13c50 travis failing with libgfortran not found, hopefully this should fix it
b246358 rename modelA and modelB to modelS and modelD, cleanup while copying the object at Neutral level
ad7236b enzcomplex pool cleaned-up
8fce41c indentation corrected while writting annotation for enzymecomplex

git-subtree-dir: moose-core
git-subtree-split: 1271dcd74baf95a973debcdef0fc8b348010bb78