Squashed 'moose-examples/' changes from 3047477ce7..2d9849222d

2d9849222d Add 3 new demos for rdesigneur (#41)
f25999106c update sbml file to store scenepos
2f78a07958 Fixed testHSolve script.
c537773939 Use python based relpath. The realpath utility is too old on travis.
5dbee3920d Merge pull request #39 from upibhalla/master
5a2af75f90 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
fda496c533 minor fix to scaleVolumes demo
0fe42549ce Added ex8.1 for CICR in a multiscale model. Some updates to ex8.2 and the README
2e1b2035f4 Added rdesigneur tutorial for synaptic-input triggered CICR
59a458b611 Fix to units for permeability for ConcChan, affects ex7.2_CICR.py
2b026c5ab5 Updated some demos, added new ex7.2 which demonstrates CICR, endo-compartments, and the operation of ConcChans.
a6adb6acc1 mooseaddChemSolver changed to mooseAddChemSolver, commented buildXreac and filterXreac
27855bb699 Renamed the file. First argument takes the method name.
12f57e76ba Update test_ksolve_lsode.py
6355deb202 This version is used to compare results for BhallaLab/moose-core#281.
611f68a88b Added script to test lsoda.
2aa25c3ff4 Merge pull request #38 from upibhalla/master
b32b8248fc Added Rdesigneur tutorial to show spine geometry change controlled by chemical signaling, and its electrical and chemical consequences
069138a897 Added new Rdesigneur demo for NeuroMesh, involving a multiscale simulation across PSD, spine head, and dendrite.
c8206c5cb9 Added index.md to keep the status of broken/successful and blacklisted scripts.
0ee1478166 Removed status of scripts from master branch.
8bac923266 Don't append to README at every run. Just rewrite it.
69bfa16e5c Broken scripts are added to README.md file.
a6d062ad68 When file fails. Emit output.
504aed9095 Don't run any script which has 'import moogli' in it.
14eb93c141 Install coreutils for realpath.
2267214e07 modify README.md file.
0304f392bd Don't run if `import moogli` is found.
c4c58a7c86 Fixed failed to cd to repository before any scripts can be run.
913d133aeb print pwd. This is a debug step.
730066df6b README.md links to the gh-pages.
1a83c474fa Fix url of repository.
370d36a30e return error code 1 as soon as error occurs.
3a86cc9a85 Fixed typo.
b5a56a5805 Write to index.md file.
1dcd80c04c Return status 1 when any file failed to be executed.
70b11410a6 Add status to readme file.
967effce16 Now test on travis.
8b597e68fa Ran travis test out of source.
8cb1aefab9 cmake does most of the work to write to temp file. Run it from outside of directory.
8a0ab11f11 Update.
ba3f15e080 Updated run script.
61b70ef299 Fixed some scripts overwritten by mistake.
8891b79972 If second option is not given, compute md5sum.
cd54b2f8f2 Cleanup after updating README.md file.
006e7f3536 new gitignore.
b242bfa3aa Append to README.md file.
f2498cbbe1 Relative to CMakeFile.txt which is at top-level.
01b6c5225d Fixed scripts which were overwritten.
8a546d03de Also add files which were not run [skip ci].
451e470cf6 Print URL in BROKEN scripts as well.
604eb8211c Relative to CMakeFile.txt which is at top-level.
cbe1b6ccbd shell script reads if file exists.
f4f2e21e71 Added more dependencies.
9a297c615f Added successul scripts to  output as well.
65e2b09f73 More details file.
85bee3c897 run test in topmost level of directory.
09023f61ef Cleanup for travis and auto-update for page containing broken scripts. (#37)
fb6a2d066d Better testing of scripts on travis using cmake (#36)
aa68204303 Merge branch 'master' into master
35d531282d Removed non-existent commands.
8f4f282c6e Ignore vendor directory.
3e42018200 Use GHI_TOKEN variable.
bce33fb3d4 Run deploy script as well.
62c3fae7f5 Deploy the results on gh-pages.
9e159c469f Added matplotlib to dependencies. Many script failing.
c3d75d36cd Fixes to master branch Travis's failure  (#35)
b33db0b393 Merge pull request #31 from upibhalla/master
76d4e61f4d Further cleanup of tutorials/Rdesigneur. Added nice multiscale example. Updated its README. Added a couple of neuronal morphology files to play with.
b8630af8c1 Added random and periodic synaptic input stimulus to Rdesigneur. Made an example of each in Rdesigneur tutorial.
6ff0c3d27f Merge branch 'master' of https://github.com/upibhalla/moose-examples
52bff7e45b Added new Rdesigneur tutorial examples to show how to use the new voltage clamp feature. Did some reorganizing of example names.
de331905c1 Show broken or fixed scripts at the end of run. (#34)
00f66c3cfe Merge branch 'master' into master
2fe1a06594 Fixes to travis failure for master branch (#33)
d7ed125b6a Merge branch 'master' of https://github.com/upibhalla/moose-examples
3380e9bc90 Added new Rdesigneur examples to go with new features for cellProto definition
584f4aa34d Update INTERACTIVE
1f98eec417 Update .travis.yml
279362600b indentation clean up
cd75c017a4 Update rxdSpineSize.py
be269052df Update scaleVolumes.py
ac90c0a673 Update rxdSpineSize.py
f116a6697a Updates mostly to Rdesignuer tutorials
a5cf6e2788 Resolved various merge conflicts
10e9ef4407 Added some new tutorials and a README
451c90b85d Fixes to snippets, updates to ChemBistable tutorials
2cb64c2519 Fixed script. raw_input is back. Will break with python3.
22b5f82d39 Merge branch 'master' of github.com:BhallaLab/moose-examples
a5f3c07ec8 Merge branch 'master' of github.com:BhallaLab/moose-examples
9bd3506e15 Added timing information and fix the python3 changes.
8eb005552e Parallel Ksolve.
49f7c06025 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
78b563be6b Updated to match newer rdesigneur

git-subtree-dir: moose-examples
git-subtree-split: 2d9849222d6f4e153745d5c4b077e7ecb81f0ede