Commits · master · arbor-sim / arbor

Aug 27, 2024

added brunel network tutorial (#2387) · a4c3fa64

Han Lu authored 8 months ago


added Brunel network tutorial on Arbor

Closes: #1933

---------

Co-authored-by: Thorsten Hater <24411438+thorstenhater@users.noreply.github.com>

a4c3fa64

Aug 23, 2024
- Small syntax fix for profiler macro calls (#2391) · 8ac8b139
  Jannik Luboeinski authored 8 months ago
  
  8ac8b139
Aug 15, 2024

ASCII art for segment tree (#2224) · 2c08a566

Thorsten Hater authored 8 months ago

Allow ASCII rendering of segment trees and morphologies for debugging
Example `segment_tree`
```
                      |              |                +-[-- id=1161 --]-+-[-- id=1709 --]---[-- id=2234 --]-+-[-- id=2625 --]---[-- id=3172 --]
                      |              |                |                 |                                   +-[-- id=2928 --]---[-- id=3765 --]
                      |              |                |                 |
                      |              |                |                 +-[-- id=1721 --]---[-- id=3504 --]---[-- id=3846 --]
                      |              |                |
                      |              |                +-[-- id=1867 --]
                      |              |
                      |              +-[-- id=1451 --]-+-[-- id=2356 --]
                      |                                +-[-- id=2471 --]---[-- id=2670 --]---[-- id=4031 --]
                      |
             ...

2c08a566

added E_R to lif cell model (#2383) · 1050ff45
Han Lu authored 8 months ago
```
added a missing construction argument E_R to LIF cell in python
```
1050ff45

Auto-generate type stubs (#2384) · 8ac0dc72

Thorsten Hater authored 8 months ago

So far, we have manually generated stubs by installing
`pybind11-stubgen`, using it, and finally copying over the result
into `python/stubs`. This is tedious and tends to get forgotten, thus
stubs are outdated, and clashes with `black`
constantly.

Thus, we
- remove the static stub directory
- generate stubs directly during build time
- enable users to opt out

PS: There are some fixes to warnings thrown during the stub
construction, too.

8ac0dc72

Aug 13, 2024
- v0.10.0 post-release (#2381) · b1463f16
  Thorsten Hater authored 8 months ago
```
Update spack, DOIs, and citations.
```
  b1463f16
Aug 09, 2024

Release v0.10.0 (#2380) · 6b6cc900

Thorsten Hater authored 8 months ago

# v0.10.0 (*08.08.2024*)

## Major Changes since v0.9.0
* Automatic network generation from high-level specifications.
* Units at the user interface including scaling and conversion.
* Morphologies are loaded through a unified interface; which produces a bundle of morphology, metadata, and segment tree.

## Internal Updates

* Documentation overhaul
* Python bindings offer type stubs; giving auto-completion and inline documentation in some editors/IDEs.
* Performance improvements
  - Label resolution uses hashes instead of strings, saving memory, network traffic, and time.
  - Spike delivery is up to 30% faster leading to 10% end-to-end improvements in some cases (e.g. `example/brunel`) 
  - Load balancing is faster and doesn't rely on MPI, leading to shorter setup times for large networks.
* Fixes
  - Better support for source builds on MacOS (aarch64)
  - `modcc` no longer allows internal variables (`v`, `celsius`, ...) as `ASSIGNED`
  - Better support for raw (...

2 tags

6b6cc900

Aug 08, 2024

Update interconnectivity.rst (#2353) · 2c6da98c

Han Lu authored 8 months ago

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2c6da98c

fixed typo and code style (#2344) · 16c86878

Han Lu authored 8 months ago

Thorsten please add the units

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16c86878

fixed the writing (#2289) · cd2f5323

Han Lu authored 8 months ago

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cd2f5323

simply typeseting (#2303) · 380bf3c7

Han Lu authored 8 months ago

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380bf3c7

Aug 07, 2024

fixed typos etc (#2339) · 6b6f3dc8

Han Lu authored 8 months ago

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6b6f3dc8

Aug 05, 2024

Use `-march` correctly (#2302) · 1813fcd4

Thorsten Hater authored 8 months ago

Selecting tuning flags depends on compilers and architectures. 
Account for this complication which became more apparent w/
proliferation of Arm64 based chips.

Following from: https://maskray.me/blog/2022-08-28-march-mcpu-mtune

Also fix a new --- sensible --- warning.

1813fcd4

Add Allen Institute's Exp2Syn to Arbor. (#2293) · 1a9e3d5f
Thorsten Hater authored 8 months ago
```
Add the Allen Institute flavoured Exp2Syn to the Allen catalogue.
```
1a9e3d5f

Aug 01, 2024

code styling (#2376) · 9ff54f8e

Han Lu authored 8 months ago

make them form a habit from beginning lol

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9ff54f8e

quick fix (#2377) · 21ea04d7

Han Lu authored 8 months ago

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21ea04d7

Update build_install.rst (#2379) · ff5d2352

Han Lu authored 8 months ago

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ff5d2352

fixed typo grammar (#2359) · 9f1dd8a1

Han Lu authored 8 months ago

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9f1dd8a1

wording check (#2371) · dbce60f6

Han Lu authored 8 months ago

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dbce60f6

fix wording (#2373) · 69d978ad

Han Lu authored 8 months ago

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69d978ad

Pro-forma change for re-directing notifications. (#2363) · ba4141dd
Thorsten Hater authored 8 months ago
```
Bump cron settings to spam @brenthuisman less and me more.
```
ba4141dd

fixed wording (#2374) · c58dd2c2

Han Lu authored 8 months ago

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c58dd2c2

fixed typo (#2375) · d583a52d

Han Lu authored 8 months ago

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d583a52d

wording check (#2372) · 7b489c9d

Han Lu authored 8 months ago

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7b489c9d

quick touch (#2365) · 0a746222

Han Lu authored 8 months ago

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0a746222

quick fix of typo, grammar, etc (#2362) · 2e035026

Han Lu authored 8 months ago

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2e035026

quick touch and fix typos etc (#2366) · 23775c7d

Han Lu authored 8 months ago

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23775c7d

quick touch (#2368) · 28c2b7d1

Han Lu authored 8 months ago

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28c2b7d1

wording fix (#2367) · 0a514a4f

Han Lu authored 8 months ago

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0a514a4f

quick touch (#2369) · 1d416d84

Han Lu authored 8 months ago

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1d416d84

quick touch (#2370) · 54454228

Han Lu authored 8 months ago

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54454228

Update cell_groups.rst (#2364) · b8087afa

Han Lu authored 8 months ago

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b8087afa

fixed typo and grammar (#2360) · b96b2b54

Han Lu authored 8 months ago

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b96b2b54

Update hardware.rst (#2354) · 892aa187

Han Lu authored 8 months ago

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892aa187

type setting (#2304) · 0d1987c5

Han Lu authored 8 months ago

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0d1987c5

Update spike_source_cell.rst (#2348) · 21fea376

Han Lu authored 8 months ago

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21fea376

fxied typo (#2325) · da9635d3

Han Lu authored 8 months ago

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da9635d3

fixed typo and code (#2345) · 6e46ac0e

Han Lu authored 8 months ago

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6e46ac0e

Jul 31, 2024

Update benchmark_cell.rst (#2349) · 95c28ada

Han Lu authored 8 months ago

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95c28ada

Update cable_cell_format.rst (#2346) · 734446fb

Han Lu authored 8 months ago

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734446fb