- Aug 27, 2024
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Han Lu authored
added Brunel network tutorial on Arbor Closes: #1933 --------- Co-authored-by:Thorsten Hater <24411438+thorstenhater@users.noreply.github.com>
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- Aug 23, 2024
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Jannik Luboeinski authored
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- Aug 15, 2024
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Thorsten Hater authored
Allow ASCII rendering of segment trees and morphologies for debugging Example `segment_tree` ``` | | +-[-- id=1161 --]-+-[-- id=1709 --]---[-- id=2234 --]-+-[-- id=2625 --]---[-- id=3172 --] | | | | +-[-- id=2928 --]---[-- id=3765 --] | | | | | | | +-[-- id=1721 --]---[-- id=3504 --]---[-- id=3846 --] | | | | | +-[-- id=1867 --] | | | +-[-- id=1451 --]-+-[-- id=2356 --] | +-[-- id=2471 --]---[-- id=2670 --]---[-- id=4031 --] | | +-[-- id=35 --]---[-- id=263 --]-+-[-- id=409 --]-+-[-- id=475 --]---[-- id=1347 --] | | +-[-- id=480 --]-+-[-- id=1764 --]-+-[-- id=1912 --] | | | | +-[-- id=2975 --] | | | | | | | +-[-- id=2047 --] | | | | | +-[-- id=3124 --] | | | +-[-- id=548 --]-+-[-- id=1436 --]---[-- id=1699 --] | | +-[-- id=2194 --] | | +-[-- id=3250 --] | | +-[-- id=3281 --] | | +-[-- id=3589 --] | | | +-[-- id=651 --]-+-[-- id=943 --]-+-[-- id=1024 --]-+-[-- id=1070 --]-+-[-- id=1477 --]-+-[-- id=1939 --] | | | | | | +-[-- id=3457 --] | | | | | | | | | | | +-[-- id=2475 --] | | | | | | | | | +-[-- id=1929 --] | | | | | | | +-[-- id=1314 --]---[-- id=2677 --] | | | | | +-[-- id=1793 --]---[-- id=2792 --] | | | +-[-- id=1391 --]-+-[-- id=2548 --] | +-[-- id=2743 --] | | +-[-- id=1621 --]---[-- id=3879 --] +-[-- id=1914 --]-+-[-- id=2572 --] | +-[-- id=3385 --] | +-[-- id=3991 --] ``` and the same snippet in the equivalent morphology ``` +-<-- id=217 len=1 -->-+-<-- id=301 len=1 -->-+-<-- id=310 len=2 -->-+-<-- id=2246 len=2 --> | | | +-<-- id=2830 len=1 --> | | | | | +-<-- id=323 len=1 -->-+-<-- id=361 len=3 --> | | | +-<-- id=1696 len=1 -->-+-<-- id=2166 len=1 --> | | | | +-<-- id=2260 len=2 --> | | | | | | | +-<-- id=1735 len=1 -->-+-<-- id=1818 len=1 --> | | | | +-<-- id=2118 len=1 --> | | | | | | | +-<-- id=1909 len=3 --> | | | +-<-- id=2772 len=1 --> | | | +-<-- id=3004 len=1 --> | | | | | +-<-- id=344 len=1 -->-+-<-- id=714 len=1 -->-+-<-- id=937 len=2 --> | | | | +-<-- id=1292 len=2 --> | | | | +-<-- id=1698 len=1 -->-+-<-- id=2036 len=1 --> | | | | +-<-- id=2382 len=1 --> | | | | | | | | | | | +-<-- id=864 len=4 --> | | | +-<-- id=2412 len=2 --> | | | | | +-<-- id=1570 len=1 --> | | | +-<-- id=355 len=1 -->-+-<-- id=928 len=1 -->-+-<-- id=2200 len=2 --> | | | +-<-- id=2427 len=1 --> | | | +-<-- id=2523 len=1 --> | | | +-<-- id=2988 len=1 --> | | | | | +-<-- id=1303 len=1 -->-+-<-- id=2169 len=1 -->-+-<-- id=2334 len=1 --> | | | | +-<-- id=2708 len=2 --> | | | | | | | +-<-- id=2647 len=1 --> | | | | | +-<-- id=1399 len=1 --> | | | +-<-- id=704 len=2 --> | +-<-- id=1157 len=2 --> ``` Closes #2132 -
Han Lu authored
added a missing construction argument E_R to LIF cell in python
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Thorsten Hater authored
So far, we have manually generated stubs by installing `pybind11-stubgen`, using it, and finally copying over the result into `python/stubs`. This is tedious and tends to get forgotten, thus stubs are outdated, and clashes with `black` constantly. Thus, we - remove the static stub directory - generate stubs directly during build time - enable users to opt out PS: There are some fixes to warnings thrown during the stub construction, too.
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- Aug 13, 2024
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Thorsten Hater authored
Update spack, DOIs, and citations.
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- Aug 09, 2024
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Thorsten Hater authored
# v0.10.0 (*08.08.2024*) ## Major Changes since v0.9.0 * Automatic network generation from high-level specifications. * Units at the user interface including scaling and conversion. * Morphologies are loaded through a unified interface; which produces a bundle of morphology, metadata, and segment tree. ## Internal Updates * Documentation overhaul * Python bindings offer type stubs; giving auto-completion and inline documentation in some editors/IDEs. * Performance improvements - Label resolution uses hashes instead of strings, saving memory, network traffic, and time. - Spike delivery is up to 30% faster leading to 10% end-to-end improvements in some cases (e.g. `example/brunel`) - Load balancing is faster and doesn't rely on MPI, leading to shorter setup times for large networks. * Fixes - Better support for source builds on MacOS (aarch64) - `modcc` no longer allows internal variables (`v`, `celsius`, ...) as `ASSIGNED` - Better support for raw (C++) mechanisms * MC cells renamed cable cells. ## Breaking changes * Return values of all morphology loaders have changed. * Raw (segment tree) loaders removed. * Support for Python 3.8 removed. * C++: Removed `simulation::inject_events`, use a generator instead. ## New Contributors * @ErbB4 made their first contribution in https://github.com/arbor-sim/arbor/pull/2271 **Full Changelog**: https://github.com/arbor-sim/arbor/compare/v0.9.0...v0.10.0
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- Aug 08, 2024
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Han Lu authored
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Han Lu authored
Thorsten please add the units <!-- Please make sure your PR follows our [contribution guidelines](https://github.com/arbor-sim/arbor/tree/master/doc/contrib) and agree to the terms outlined in the [PR procedure](https://github.com/arbor-sim/arbor/tree/master/doc/contrib/pr.rst ). --> --------- Co-authored-by:
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Han Lu authored
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Han Lu authored
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- Aug 07, 2024
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Han Lu authored
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- Aug 05, 2024
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Thorsten Hater authored
Selecting tuning flags depends on compilers and architectures. Account for this complication which became more apparent w/ proliferation of Arm64 based chips. Following from: https://maskray.me/blog/2022-08-28-march-mcpu-mtune Also fix a new --- sensible --- warning.
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Thorsten Hater authored
Add the Allen Institute flavoured Exp2Syn to the Allen catalogue.
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- Aug 01, 2024
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Han Lu authored
make them form a habit from beginning lol <!-- Please make sure your PR follows our [contribution guidelines](https://github.com/arbor-sim/arbor/tree/master/doc/contrib) and agree to the terms outlined in the [PR procedure](https://github.com/arbor-sim/arbor/tree/master/doc/contrib/pr.rst). -->
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Thorsten Hater authored
Bump cron settings to spam @brenthuisman less and me more.
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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Han Lu authored
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- Jul 31, 2024
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Han Lu authored
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Han Lu authored
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