- Jul 26, 2016
- Jul 25, 2016
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Sam Yates authored
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- Jul 20, 2016
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Ben Cumming authored
Validation test updates
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Sam Yates authored
* Remove vestigial #if 0 * Add missing cstring include, std:: in validate.cpp * Simpler synapse index logic in fvm_cell.hpp
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- Jul 18, 2016
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Sam Yates authored
* -S (--syntype) option passes argument through to synapse creation in `make_cell`.
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Sam Yates authored
* Give synapse mechanisms helpers * Describe synapses in `cell` with location and param list * Align exp2syn parameters with nrn generated test * Add unit tests for exp2syn functionality
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Sam Yates authored
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- Jul 15, 2016
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Sam Yates authored
* Clean up validation CMake * Use configure-time path to validation data by default * Checks in validation data * Bring validate_synapses up to date with current source API. * Allow -p option in validation test to point to validation data directory.
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- Jul 14, 2016
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Sam Yates authored
* Add a tweaked version of exp2syn.mod that is modparser compatible. * Add option to simple_synapse.py to choose which syn type to use. * Compatibility tweak for runinng nrn scripts with nrniv -python
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- Jul 12, 2016
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Ben Cumming authored
Feature/plotting
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Sam Yates authored
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Sam Yates authored
* Use `units` consistently in miniapp.cpp * Describe the special treatment of the metadata key `label` in tsplot.
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Sam Yates authored
* Adds README.md for scripts (currently just for tsplot) * Renames tsplot.py to just tsplot for simplicity * Change long option --out to --output for tsplot
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Sam Yates authored
* Do not try to plot excluded points if there is no excluded time series to plot. * Perform runtime check on matplotlib version for early exit in case of mismatch.
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Sam Yates authored
further style fixes in point
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Sam Yates authored
* Add -x option to clip extreme y values automatically.
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- Jul 11, 2016
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Sam Yates authored
Unicode handling changes between 2.7.9 and 2.7.12, and what worked transparently in the latter breaks weirdly in the former. This patch coerces everything to unicode for great justice. Fix logger warning issue.
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Sam Yates authored
First working implementation. * miniapp saves more metadata in json output, including units * tsplot.py will plot multiple timeseries, optionally gathering multiple plots on the one axis set Note that documentation is missing and there isn't a clipping functionality in tsplot.py, which it should have in the presence of numerical instability.
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- Jul 08, 2016
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Benjamin Cumming authored
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Sam Yates authored
fix cmake to find TBB installed from source
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Benjamin Cumming authored
there was a problem with the FindTBB script for cmake where it cmake was not looking in paths specified by the environment variable LIBRARY_PATH, which meant that it was not finding the TBB library files when TBB had been installed from source and configured with tbbvars.sh
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- Jul 07, 2016
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Benjamin Cumming authored
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Ben Cumming authored
Address gcc 6.1 warnings
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Benjamin Cumming authored
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Sam Yates authored
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Sam Yates authored
add missing cmath header
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Benjamin Cumming authored
GCC 6.1 was unable to find cmath in src/point.hpp
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Ben Cumming authored
Feature/refactor tests directory
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Wouter Klijn authored
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Wouter Klijn authored
Adapt sources to include test_unit.hpp Add empty CMakeLists.txt to all test type directories
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Sam Yates authored
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Wouter Klijn authored
Gtest is currently copy twice!
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- Jul 06, 2016
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Ben Cumming authored
Fix optional<X&> assignment.
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Sam Yates authored
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Sam Yates authored
* Correct implementation of operator=(). * Unit test for optional reference assignment.
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Sam Yates authored
Modifications to util::optional for KNL compilation
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Benjamin Cumming authored
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Benjamin Cumming authored
Turn off warning about unused template parameter, when the parameter is used for SFINAE tests inside the template parameter list in the json library.
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Benjamin Cumming authored
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