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TVB-2635 Cleanup deprecated import from collections directly

Marmaduke Woodman requested to merge TVB-2635 into master

Created by: liadomide

  • Cleanup imports
  • remove checks if sys.version_info[0] == 3: as we no longer support py2
  • use get_logger in traited modules, to display logs uniformly
  • migrate jinja2 unit-test towards the new format of usage in the code

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