- Nov 18, 2016
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HarshaRani authored
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Dilawar Singh authored
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Dilawar Singh authored
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Dilawar Singh authored
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Dilawar Singh authored
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Dilawar Singh authored
Removed `libsbml-dev` requirement. Also `moosegui` is now `moose`.
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Dilawar Singh authored
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- Nov 17, 2016
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Dilawar Singh authored
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Harsha Rani authored
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Harsha Rani authored
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Harsha Rani authored
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Dilawar Singh authored
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Dilawar Singh authored
[ skip ci ]
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Dilawar Singh authored
can handle environment variables cleanly.
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- Nov 16, 2016
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Harsha Rani authored
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Dilawar Singh authored
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Dilawar Singh authored
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- Nov 15, 2016
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Harsha Rani authored
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Harsha Rani authored
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Harsha Rani authored
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Harsha Rani authored
Doxygen_1.8.9 is added which should be used to generate doxygen files,Rdesigneur folder is creater under "user" folder and corrected index.rst file is updated, deleted "html" folder,Rdesigneur markdown file with correct date,"snippet " and "tutorial"folder is created with relevant files to generate html files
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- Nov 14, 2016
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Dilawar Singh authored
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Dilawar Singh authored
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Dilawar Singh authored
6a6bcc1 Python module can also use VERSION file generated by CMAKE. Copy to build directory for not-in-source builds. BhallaLab/moose#200. 7805364 Failsafe mechanism in VERSION reading script. git-subtree-dir: moose-core git-subtree-split: 6a6bcc15556a58e08c24203599c3c84837eb65bd
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Dilawar Singh authored
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Dilawar Singh authored
9eeca0c Fixed a typo in setup.py file. Due to which installation was failing without any warning. git-subtree-dir: moose-core git-subtree-split: 9eeca0ca8135fbf3c8fe7dd65ce408681b1e4605
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Dilawar Singh authored
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Dilawar Singh authored
14cf2df Fixed the setup.py file. Use absolute path for script to determine absolute path of VERSION file. git-subtree-dir: moose-core git-subtree-split: 14cf2df3a65456c6b4ce67b2d34110fd3400c982
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Dilawar Singh authored
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Dilawar Singh authored
343cb02 Fixes to VERSION issue BhallaLab/moose#200. 835bf9a Added a version file. git-subtree-dir: moose-core git-subtree-split: 343cb02705b0874ad0035eea648019420475f7ed
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Dilawar Singh authored
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Dilawar Singh authored
e49ca7d Changes Function symbol to summation symbol, objectedit.py function expr is not editable as this summation of pools, some cleanup with colors selection,Function which is now just summation object, set's up setN for output as input is nout 328b8f5 for now function output connected to pool via setConc message, but there is "increment" which depend on the function input this will be fixed later 16075b3 cleanup with colormap string from genesis file aa377ed resetup for multicompartment model before setting up the solver 26d2be7 Changes made are related to functions which now doesn't need parent as pool but if exist like in case of genesis then it displays as its, setsolver: setting ticks to table, 18 is not required as its set default when table is created 7ad2bb9 plot are saved to csv forms 20a76af some more cleanup 653b464 added units for Km, kcat is added which display in object editor cbf2c5e added units for volume which display in object editor, vector data for stimulusTable is editable for enz_cplx delete and move is not allowed so removed the icons 6882e0b some more colors to ignore which are light faad938 If compartment is moved,then object is move then, movement of object with respect to qtscenecoro-ordinates was not moving correctly that is correctly, in KKitOrdinateUtil: pygraphviz:- instead of larrow for reaction I have circle for now, if one needs to save the image of the model loaded 0f0674d small cleanup 0ab70d7 cleaner way to set co-ordinate with round trip 49a3f9c time being removing import sbml 0622266 instead of pygraphviz_layout which was dependent on pygrapviz installation using graphviz_layot from networkx itself a62e275 MMENZ and cplx connection exist, if MMEnz is moved then arrow to cplx is updated ad437db saved sbmlfile return to calling function a108d2c Instead of spring_layout using pygraphviz_layout which can be further used for saving the layout image to png format 624f52b 1.Getting layout co-ordinates to Genesis co-ordinates 2.Automaticlayout done using pyqgraphviz for files for sbml and cspace. 3.Separate messge if missing output for StimulusTable and Function db36afc Size of the compartment is cleanedup 1ef13c9 QGraphicsRectItem when no children, then setRect size is fixed to default size git-subtree-dir: moose-gui git-subtree-split: e49ca7da411f0cc7ad8b62ff077522ef92ba2390
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Dilawar Singh authored
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Dilawar Singh authored
d7e9a97 Merge branch 'master' of https://github.com/BhallaLab/moose-examples 0def9bd correction with function names e9950fe Merge pull request #7 from rahulgayatri23/master 0e7cef8 Contains a readme file. 282955a clean up in checking the file name and runtime ed2198f Merge branch 'master' of https://github.com/BhallaLab/moose-examples 37ad100 mooseReadSBML is corrected 64565e9 parallelSolver folder has a script to try the parallelization of the solvers. bdc5c95 Added spine calcium diffusion chemical model example files 344f73c traub 2005 gui: switched to networkx for drawing morphology 747bbee Partial fix to traub 2005 demo. d458ca8 fixed a work around for small bug in the draw_grapviz function in networkx-1.11 which no longer import toplevel namespace 599d976 Updated traub2005 example. 70b3389 New examples for axon and myelinated axon git-subtree-dir: moose-examples git-subtree-split: d7e9a9791cf267811eaac827e0915cc021309ee5
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Dilawar Singh authored
ed5f015 Update README.md a4a5cc1 Fixed linking error compiling with new gcc. 9a82850 Merge commit '912c550e28d1fccfd310c5968a07ae38dc60c698' 0fb7431 Added option to explicitly set CMAKE_DL_LIBS flag (-ldl). da5fd97 Merge commit '9296cecdffbe647a929af4792360adbc3768e4bd' 093e681 Disabled unused part of code #86. c698620 Merge commit '11af2e3b2ecd7b31aefa957412abb5b64ce54014' 57714ae Fixes to VERSION bug. See #BhallaLab/moose#200 59512e1 Merge commit '1d69d002939cc4b270ff4fc51e8a4800a6fbdad1' 3adb8b3 removed a print statement 9aa9405 Use git to generate version when not passed via command line. BhallaLab/moose#200 . 2f8a48e Merge commit '18331bb5a2f6aa2918a4e49b178297a79e3c791b' c9714fd Merge branch 'master' of github.com:BhallaLab/moose-python-package df2186a Merge commit 'ec45fa526f0e2de2b49bf05f3f7f8ddb1c7ff463' git-subtree-dir: moose-core git-subtree-split: ed5f0151b5c12301b826e47e5a1daaaa7044a714
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Dilawar Singh authored
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Dilawar Singh authored
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- Nov 11, 2016
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Harsha Rani authored
clean up, all markdown files will be placed under docs/user/markdown, images under /docs/images one can use markdown2rst.py to convert Rdesigner,MooseGui and Kkit docs which places the file under docs/user/GUI and docs/user/Rdesigneur and further one can use makefile to convert to rst to html which will be placed under _build folder in respective folders
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Harsha Rani authored
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