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  1. Nov 18, 2016
  2. Nov 17, 2016
  3. Nov 16, 2016
  4. Nov 15, 2016
  5. Nov 14, 2016
    • Dilawar Singh's avatar
      This should pass on travis. · f1d6aba3
      Dilawar Singh authored
      f1d6aba3
    • Dilawar Singh's avatar
      Merge commit 'd0a6060b' · 7143a53a
      Dilawar Singh authored
      7143a53a
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 9eeca0c..6a6bcc1 · d0a6060b
      Dilawar Singh authored
      6a6bcc1 Python module can also use VERSION file generated by CMAKE. Copy to build directory for not-in-source builds. BhallaLab/moose#200.
      7805364 Failsafe mechanism in VERSION reading script.
      
      git-subtree-dir: moose-core
      git-subtree-split: 6a6bcc15556a58e08c24203599c3c84837eb65bd
      d0a6060b
    • Dilawar Singh's avatar
      Merge commit 'b5a7c2e2' · 15f18b90
      Dilawar Singh authored
      15f18b90
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 14cf2df..9eeca0c · b5a7c2e2
      Dilawar Singh authored
      9eeca0c Fixed a typo in setup.py file. Due to which installation was failing without any warning.
      
      git-subtree-dir: moose-core
      git-subtree-split: 9eeca0ca8135fbf3c8fe7dd65ce408681b1e4605
      b5a7c2e2
    • Dilawar Singh's avatar
      Merge commit '273124ec' · fef5e24c
      Dilawar Singh authored
      fef5e24c
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 343cb02..14cf2df · 273124ec
      Dilawar Singh authored
      14cf2df Fixed the setup.py file. Use absolute path for script to determine absolute path of VERSION file.
      
      git-subtree-dir: moose-core
      git-subtree-split: 14cf2df3a65456c6b4ce67b2d34110fd3400c982
      273124ec
    • Dilawar Singh's avatar
      Merge commit '8bfef2e6' · 7822c60b
      Dilawar Singh authored
      7822c60b
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from ed5f015..343cb02 · 8bfef2e6
      Dilawar Singh authored
      343cb02 Fixes to  VERSION issue BhallaLab/moose#200.
      835bf9a Added a version file.
      
      git-subtree-dir: moose-core
      git-subtree-split: 343cb02705b0874ad0035eea648019420475f7ed
      8bfef2e6
    • Dilawar Singh's avatar
      Merge commit 'aca40347' · fb9fba5e
      Dilawar Singh authored
      fb9fba5e
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from 1e5f537..e49ca7d · aca40347
      Dilawar Singh authored
      e49ca7d Changes Function symbol to summation symbol, objectedit.py function expr is not editable as this summation of pools, some cleanup with colors selection,Function which is now just summation object, set's up setN for output as input is nout
      328b8f5 for now function output connected to pool via setConc message, but there is "increment" which depend on the function input this will be fixed later
      16075b3 cleanup with colormap string from genesis file
      aa377ed resetup for multicompartment model before setting up the solver
      26d2be7 Changes made are related to functions which now doesn't need parent as pool but if exist like in case of genesis then it displays as its, setsolver: setting ticks to table, 18 is not required as its set default when table is created
      7ad2bb9 plot are saved to csv forms
      20a76af some more cleanup
      653b464 added units for Km, kcat is added which display in object editor
      cbf2c5e added units for volume which display in object editor, vector data for stimulusTable is editable for enz_cplx delete and move is not allowed so removed the icons
      6882e0b some more colors to ignore which are light
      faad938 If compartment is moved,then object is move then, movement of object with respect to qtscenecoro-ordinates was not moving correctly that is correctly, in KKitOrdinateUtil: pygraphviz:- instead of larrow for reaction I have circle for now, if one needs to save the image of the model loaded
      0f0674d small cleanup
      0ab70d7 cleaner way to set co-ordinate with round trip
      49a3f9c time being removing import sbml
      0622266 instead of pygraphviz_layout which was dependent on pygrapviz installation using graphviz_layot from networkx itself
      a62e275 MMENZ and cplx connection exist, if MMEnz is moved then arrow to cplx is updated
      ad437db saved sbmlfile return to calling function
      a108d2c Instead of spring_layout using pygraphviz_layout which can be further used for saving the layout image to png format
      624f52b 1.Getting layout co-ordinates to Genesis co-ordinates 2.Automaticlayout done using pyqgraphviz for files for sbml and cspace. 3.Separate messge if missing output for StimulusTable and Function
      db36afc Size of the compartment is cleanedup
      1ef13c9 QGraphicsRectItem when no children, then setRect size is fixed to default size
      
      git-subtree-dir: moose-gui
      git-subtree-split: e49ca7da411f0cc7ad8b62ff077522ef92ba2390
      aca40347
    • Dilawar Singh's avatar
      Merge commit '3c9138df' · 2f085e3e
      Dilawar Singh authored
      2f085e3e
    • Dilawar Singh's avatar
      Squashed 'moose-examples/' changes from 0494d05..d7e9a97 · 3c9138df
      Dilawar Singh authored
      d7e9a97 Merge branch 'master' of https://github.com/BhallaLab/moose-examples
      0def9bd correction with function names
      e9950fe Merge pull request #7 from rahulgayatri23/master
      0e7cef8 Contains a readme file.
      282955a clean up in checking the file name and runtime
      ed2198f Merge branch 'master' of https://github.com/BhallaLab/moose-examples
      37ad100 mooseReadSBML is corrected
      64565e9 parallelSolver folder has a script to try the parallelization of the solvers.
      bdc5c95 Added spine calcium diffusion chemical model example files
      344f73c traub 2005 gui: switched to networkx for drawing morphology
      747bbee Partial fix to traub 2005 demo.
      d458ca8 fixed a work around for small bug in the draw_grapviz function in networkx-1.11 which no longer import toplevel namespace
      599d976 Updated traub2005 example.
      70b3389 New examples for axon and myelinated axon
      
      git-subtree-dir: moose-examples
      git-subtree-split: d7e9a9791cf267811eaac827e0915cc021309ee5
      3c9138df
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from c2c32b9..ed5f015 · 6c8f2012
      Dilawar Singh authored
      ed5f015 Update README.md
      a4a5cc1 Fixed linking error compiling with new gcc.
      9a82850 Merge commit '912c550e28d1fccfd310c5968a07ae38dc60c698'
      0fb7431 Added option to explicitly set CMAKE_DL_LIBS flag (-ldl).
      da5fd97 Merge commit '9296cecdffbe647a929af4792360adbc3768e4bd'
      093e681 Disabled unused part of code #86.
      c698620 Merge commit '11af2e3b2ecd7b31aefa957412abb5b64ce54014'
      57714ae Fixes to VERSION bug. See #BhallaLab/moose#200
      59512e1 Merge commit '1d69d002939cc4b270ff4fc51e8a4800a6fbdad1'
      3adb8b3 removed a print statement
      9aa9405 Use git to generate version when not passed via command line. BhallaLab/moose#200 .
      2f8a48e Merge commit '18331bb5a2f6aa2918a4e49b178297a79e3c791b'
      c9714fd Merge branch 'master' of github.com:BhallaLab/moose-python-package
      df2186a Merge commit 'ec45fa526f0e2de2b49bf05f3f7f8ddb1c7ff463'
      
      git-subtree-dir: moose-core
      git-subtree-split: ed5f0151b5c12301b826e47e5a1daaaa7044a714
      6c8f2012
    • Dilawar Singh's avatar
      Merge commit '6c8f2012' · 58de93dd
      Dilawar Singh authored
      58de93dd
    • Dilawar Singh's avatar
      Update README.md · 9e7e1fa6
      Dilawar Singh authored
      9e7e1fa6
  6. Nov 11, 2016