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  1. Feb 02, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 14e2d78..f3d0477 · 7c713058
      Dilawar Singh authored
      f3d0477 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      176a5f0 solver's short form should also be taken
      8624e24 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      6c964b1 Added isBuffered field to Pool to let users convert the object class to BufPool, and vice versa.
      97db69e moose::Neuron uses global RNG object. Global RNG object behaviour is following. - moose.seed(0) or moose.seed( ) assign a random value to seed. Use   random_device if avaible else time(NULL) is used. - moose.seed( x) set moose.seed to x.
      c1dec94 Fixed long argument for mtseed in moosemodule.cpp
      54c94f7 Modified travis scripts and reenabled developers to the list.
      31dd779 Fixed import error with python3. No module should be imported in python/moose/__init__.py . Added a note for developers. This should fix the travis.
      
      git-subtree-dir: moose-core
      git-subtree-split: f3d0477a3ea5045db044aaae94b46a133527dbc7
      7c713058
  2. Jan 23, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 1b5b9a9..14e2d78 · a5122cfb
      Dilawar Singh authored
      14e2d78 Fixes broken Makefile. Object MMPump.o not found error is resolved by commenting out the object. Either source is missing for it was introduced by recent PR.
      aeddce7 Fixes to python3 test command in travis script. Previous fixes passed with python2.
      00ad9e2 Fixes to recent Travis build failure.  (#170)
      3ebc0a5 Merge commit '5bceacfe'
      df5ff48 Merge branch 'difshell' of https://github.com/asiaszmek/moose into asiaszmek-difshell
      e4a4bcd Change order of operations to slightly improve accuracy
      aacebcc Small changes to make the code more alike genesis and other moose objects
      4246932 Difshells and difbuffers initialize close to equilibrium
      40a200f Add forgotten setting of helper variables to zero after calculations
      dad35e6 Add state in t(i-1)
      45c2286 Fix wrong definitions
      567444a Fix errors in volume calculation
      4e0a857 Indentation
      cb40719 Add MMPump to scheduling and makefiles
      bfc456c Add MMPump to DifShell
      be1ceac Implementation of MMPump
      c721713 Add ticks for DifBufferBase and DifShellBase
      a3bee38 Fix bugs: DifShell now compiles and seems to give correct results
      b131c44 Fix a typo in zombify
      f1cbfb0 Rewrite DifShell. Inherit from DifShellBase
      1486cdd Write base class for DifShell
      336cbd1 Indentation
      d8ee906 Implement exponential Euler for DifShell
      f72d6a1 Move source messages to class. Correctly initialize Faraday's constant
      b309dc4 Move source messages to class
      5d3b7d2 Make DifBuffer look more like other moose classes and fix ticks
      9a1e166 Add DifBuffer to clocks
      f949b27 Add DifBuffer to compilation
      5418e0b Fix no ticks when initializing difshells warning
      5fba26e Remove useless variable
      7e29b64 Reintroduce an old version of DifBuffer from moose
      8f544e6 Moved to cmake folder.
      ae1a5ba Merge commit '0d12ebb0'
      3ac6c58 master branch.
      65c371c Fixes to BhallaLab/moose#204.
      
      git-subtree-dir: moose-core
      git-subtree-split: 14e2d78a7b6e41e67bdce6e3a07fa0d65565744b
      a5122cfb
  3. Jan 05, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 3f8c345..7c9fe23 · 0d12ebb0
      Dilawar Singh authored
      7c9fe23 Fixes to issue #167. (#168)
      3f077c1 Resolved merge conflict with Table.h
      9b175c8 Major bugfix for Table and derived class Streamer, to fix error introduced by duplicating the 'name' field which is already defined for Neutral. Minor bugfix for melement.cpp
      f0d4c02 Update INSTALL.md
      2737220 Fixes to issue165 (#166)
      a934676 Update .travis.yml
      601d06a Fixes to PYTHON3 build failure on travis.
      9d9d925 Tested locally for linux. The scripts seems to be fine on openSUSE-42.2
      93bbd4f By default travis pick up /opt/bin/python when `which python` is used. Do not use this construct in script. Moved travis related scripts to a hidden folder .travis.
      c0d3871 If python3 exists (installed on travis), then check for the compatibility otherwise don't.
      65a85da Almost there. Calling script from top of directory.
      0db2016 Make trusty default build environment. python3-matplotlib is not available by default.
      d8c1c6a setuid to root for linux script.
      4c90f04 Some more f...
      0d12ebb0