Squashed 'moose-core/' changes from 1b5b9a9..14e2d78
14e2d78 Fixes broken Makefile. Object MMPump.o not found error is resolved by commenting out the object. Either source is missing for it was introduced by recent PR. aeddce7 Fixes to python3 test command in travis script. Previous fixes passed with python2. 00ad9e2 Fixes to recent Travis build failure. (#170) 3ebc0a5 Merge commit '5bceacfe' df5ff48 Merge branch 'difshell' of https://github.com/asiaszmek/moose into asiaszmek-difshell e4a4bcd Change order of operations to slightly improve accuracy aacebcc Small changes to make the code more alike genesis and other moose objects 4246932 Difshells and difbuffers initialize close to equilibrium 40a200f Add forgotten setting of helper variables to zero after calculations dad35e6 Add state in t(i-1) 45c2286 Fix wrong definitions 567444a Fix errors in volume calculation 4e0a857 Indentation cb40719 Add MMPump to scheduling and makefiles bfc456c Add MMPump to DifShell be1ceac Impl...
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- .travis/travis_build_linux.sh 2 additions, 2 deletions.travis/travis_build_linux.sh
- CMakeLists.txt 1 addition, 0 deletionsCMakeLists.txt
- VERSION 1 addition, 0 deletionsVERSION
- biophysics/CMakeLists.txt 6 additions, 2 deletionsbiophysics/CMakeLists.txt
- biophysics/CaConcBase.cpp 243 additions, 243 deletionsbiophysics/CaConcBase.cpp
- biophysics/DifBuffer.cpp 467 additions, 0 deletionsbiophysics/DifBuffer.cpp
- biophysics/DifBuffer.h 96 additions, 0 deletionsbiophysics/DifBuffer.h
- biophysics/DifBufferBase.cpp 461 additions, 0 deletionsbiophysics/DifBufferBase.cpp
- biophysics/DifBufferBase.h 134 additions, 0 deletionsbiophysics/DifBufferBase.h
- biophysics/DifShell.cpp 318 additions, 589 deletionsbiophysics/DifShell.cpp
- biophysics/DifShell.h 101 additions, 152 deletionsbiophysics/DifShell.h
- biophysics/DifShellBase.cpp 513 additions, 0 deletionsbiophysics/DifShellBase.cpp
- biophysics/DifShellBase.h 144 additions, 0 deletionsbiophysics/DifShellBase.h
- biophysics/HHGate.cpp 611 additions, 611 deletionsbiophysics/HHGate.cpp
- biophysics/MMPump.cpp 141 additions, 0 deletionsbiophysics/MMPump.cpp
- biophysics/MMPump.h 45 additions, 0 deletionsbiophysics/MMPump.h
- biophysics/Makefile 9 additions, 1 deletionbiophysics/Makefile
- python/moose/chemUtil/graphUtils.py 13 additions, 3 deletionspython/moose/chemUtil/graphUtils.py
- python/moose/moose.py 7 additions, 1 deletionpython/moose/moose.py
- scheduling/Clock.cpp 8 additions, 0 deletionsscheduling/Clock.cpp
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