untar this to destination.

[skip ci]

found.

2657e3345e Merge pull request #199 from dilawar/master
973dd380ba Deleted Makefile.
545b4241c8 Restore synapse folder back to 933b259 . synapseOrder is now working.
90711a865c execute_process is now used to get the extension of python module. See http://bugs.python.org/issue16754 in case build fails on some unix because of 'SO'.
5b0a529c4e We do not reply on VERSION file to create version. TODO: Use config.h.in file to populate VERSION information.
2749918927 Accessing an existing object (#198)
220128f284 Do not run DOQCS with moose-core. Test DOQCS with released package only. Do so in moose-examples repo.
ad2c63da12 Use QUIET_MODE=ON on travis.

git-subtree-dir: moose-core
git-subtree-split: 2657e3345e8b783cf22634680c7561f8dbd9f127

Conflicts:
	moose-core/python/moose/moose_test.py

* Fix broken assertion

* Add volume calculation of DifShells and DifBuffers

Volume needs to be calculated before a diffusion message with calcium concentration or buffer concentration is obtained. Volume is calculated at reinit and sometimes a diffusion message is received before the reinit resulting in a division by volume of zero. Due to that initial concentration in some difshells and difbuffers is not correct.

* Add sending current message at reinit of channels

In HHChannel change access of functions inherited from ChanCommon.

* Remove zombification from DifShell and DifBuffer

* Add sending out current message to hsolve

Fix externalCalcium_ iteration in advanceChannels.

* Test for hsolve handling external calcium.

Slightly rewrote functions shared with test_difshells.py

* pymoose: unbreak installation under Python 3

Commit 24ebac50 removed the setting
of the suffix of the binary python module. Unfortunately no explanation
was provided…
Anyway, 'python3 setup.py build' and 'python3 setup.py install' stopped
working because setup.py is expecting a file like
_moose.cpython-36m-x86_64-linux-gnu.so, and it simply ignored _moose.so.
As a result the binary module was not installed.

* .gitignore: ignore "moose" only in the top-level directories

Just "moose" would also match python/moose, with predictably bad
consequences.

* .gitignore: ignore VERSION

It's a generated file.

* Restore moose/moose.py

It was removed in 24dea426. No
explanation was provided, but it seems to have been a mistake, because
without this file, 'import moose' has little chances of succeeding,
since __init__.py includes 'from .moose import *'.

* F...

Conflicts:
	moose-core/CMakeLists.txt

portable solution.

Script creates a test model of a dendrite segment with one Ca
channel. DifShells are created. DifBuffers are created. DifShells are
connected to provide diffusion. DifBuffers are connected to provide
diffusion. DifBuffers are connected with DifShells to provide
buffer. MMPumps are created and connected to the outer DifShell. Ca
channel is connected to the outer Difshell to provide Ca influx and
outer DifShell is connected to Ca channel to provide ion
concentration. Segment's Vm, channel's Gk and Ik, DifShell's C and
DifBuffer's bBound are connected with output to save simulation
results.

Make sure that innerArea is not negative. Move sending out of messages
to the bottom of the process function. Add sending out of
concentration to the buffer and diffusion to other difshells in
DifShell and diffusion to other buffers in DifBuffer in reinit. This
matches genesis implementation.

In DifShell reinit set C (calcium) to Ceq. In DifBuffer reinit
calculate bFree (free buffer) and bBound (bound buffer) to steady
state value. This matches genesis implementation.

Integration results were incorrect, because the helper variables were
not reset after every iteration.