Skip to content
Snippets Groups Projects
Commit d4ba03e0 authored by Dilawar Singh's avatar Dilawar Singh
Browse files

Added markdown install instructions, need to update on github with proper rst

formatting.
parent 67fea2d3
No related branches found
No related tags found
No related merge requests found
Installing MOOSE Installing MOOSE
=============== ===============
Use pre-built packages
----------------------
Use our repositories hosted at [Open Build Service](http://build.opensuse.org).
We have packages for Debian, Ubuntu, CentOS, Fedora, OpenSUSE/SUSE, RHEL,
Scientific Linux. Visit the following page and follow the instructions there.
https://software.opensuse.org/download.html?project=home:moose&package=moose
Building from source
-------------------
First, Download the latest source code of moose from github.
$ git clone https://github.com/BhallaLab/moose
$ cd moose
Install dependencies
~~~~~~~~~~~~~~~~~~~
For moose-core:
- gsl-1.16 or higher.
- libhdf5
- libsbml (optional)
Make sure that `libsml` is installed with `zlib` and `lxml` support.
If you are using buildtools, then use the following to install libsbml.
- wget http://sourceforge.net/projects/sbml/files/libsbml/5.9.0/stable/libSBML-5.9.0-core-src.tar.gz
- tar -xzvf libSBML-5.9.0-core-src.tar.gz
- cd libsbml-5.9.0
- ./configure --prefix=/usr --with-zlib --with-bzip2 --with-libxml
- make
- ctest --output-on-failure # optional
- sudo make install
For python module of MOOSE, following additional packages are required:
- Development package of python e.g. libpython-dev
- python-numpy
For python-gui, we need some more addtional packages
- matplotlib
- setuptools (cmake uses it to install moose python extension and moogli)
- suds
- Python bindings for Qt4 or higher
- Python OpenGL
- Python bindings for Qt's OpenGL module
On Ubuntu-120.4 or higher, these can be installed with:
sudo apt-get install python-matplotlib python-qt4 python-qt4-gl
## Use `cmake` to build moose:
$ mkdir _build
$ cd _build
$ cmake -DWITH_DOC=OFF ..
$ make
$ ctest --output-on-failure
This will build moose and its python extentions, `ctest` will run few tests to
check if build process was successful.
To install MOOSE into non-standard directory, pass additional argument
`-DCMAKE_INSTALL_PREFIX=path/to/install/dir` to cmake.
After that installation is pretty easy.
Install
~~~~~~~
$ sudo make install
Building and installing moogli
-----------------------------
MOOGLI is subproject of moogli for visualizing models. Details can be found
[here](http://moose.ncbs.res.in/moogli).
MOOGLI dependencies are huge! It uses `OpenSceneGraph` which has its own
dependencies. In nutshell, depending on your distribution, you would need
following packages to be installed.
- Development package of libopenscenegraph
- [libQGLViewer-2.3.15-py](https://gforge.inria.fr/frs/?group_id=773). Install
instructions [here](http://www.libqglviewer.com//installUnix.html#linux)
- [PyQGLViewer0.10](https://gforge.inria.fr/frs/?group_id=773) (first install
libQGLViewer-2.3.15-py) and untar contents.
$ cd / PyQGLViewer0.10
$ python setup.py build # to compile
$ python setup.py install # to install on your system
$ python setup.py bdist # to create a binary distribution
On Ubuntu, following packages should suffice:
$ sudo apt-get install python-qt4-dev python-qt4-gl libopenscenegraph-dev python-sip-dev
libqt4-dev
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment