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Dilawar Singh authored
formatting.
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Installing MOOSE
Use pre-built packages
Use our repositories hosted at [Open Build Service](http://build.opensuse.org). We have packages for Debian, Ubuntu, CentOS, Fedora, OpenSUSE/SUSE, RHEL, Scientific Linux. Visit the following page and follow the instructions there.
https://software.opensuse.org/download.html?project=home:moose&package=moose
Building from source
First, Download the latest source code of moose from github.
$ git clone https://github.com/BhallaLab/moose $ cd moose
Install dependencies
For moose-core:
-
gsl-1.16 or higher.
-
libhdf5
-
libsbml (optional)
Make sure that libsml is installed with zlib and lxml support. If you are using buildtools, then use the following to install libsbml.
- wget http://sourceforge.net/projects/sbml/files/libsbml/5.9.0/stable/libSBML-5.9.0-core-src.tar.gz
- tar -xzvf libSBML-5.9.0-core-src.tar.gz
- cd libsbml-5.9.0
- ./configure --prefix=/usr --with-zlib --with-bzip2 --with-libxml
- make
- ctest --output-on-failure # optional
- sudo make install
For python module of MOOSE, following additional packages are required:
- Development package of python e.g. libpython-dev
- python-numpy
For python-gui, we need some more addtional packages
- matplotlib
- setuptools (cmake uses it to install moose python extension and moogli)
- suds
- Python bindings for Qt4 or higher
- Python OpenGL
- Python bindings for Qt's OpenGL module
On Ubuntu-120.4 or higher, these can be installed with:
sudo apt-get install python-matplotlib python-qt4 python-qt4-gl
## Use cmake to build moose:
$ mkdir _build $ cd _build $ cmake -DWITH_DOC=OFF .. $ make $ ctest --output-on-failure
This will build moose and its python extentions, ctest will run few tests to check if build process was successful.
To install MOOSE into non-standard directory, pass additional argument -DCMAKE_INSTALL_PREFIX=path/to/install/dir to cmake.
After that installation is pretty easy.
Install
$ sudo make install
Building and installing moogli
MOOGLI is subproject of moogli for visualizing models. Details can be found [here](http://moose.ncbs.res.in/moogli).
MOOGLI dependencies are huge! It uses OpenSceneGraph which has its own dependencies. In nutshell, depending on your distribution, you would need following packages to be installed.
- Development package of libopenscenegraph
- [libQGLViewer-2.3.15-py](https://gforge.inria.fr/frs/?group_id=773). Install
instructions [here](http://www.libqglviewer.com//installUnix.html#linux)
- [PyQGLViewer0.10](https://gforge.inria.fr/frs/?group_id=773) (first install
libQGLViewer-2.3.15-py) and untar contents.
$ cd / PyQGLViewer0.10 $ python setup.py build # to compile $ python setup.py install # to install on your system $ python setup.py bdist # to create a binary distribution
On Ubuntu, following packages should suffice:
$ sudo apt-get install python-qt4-dev python-qt4-gl libopenscenegraph-dev python-sip-dev libqt4-dev