Squashed 'moose-core/' changes from f38dc5d..0cceb29

0cceb29 packaging related changes (#262)
dc861b2 Prepare binary distribution before installing  (#261)

git-subtree-dir: moose-core
git-subtree-split: 0cceb296d06cf021f4fb7120d3f4854c4b219143

.travis.yml

@@ -2,8 +2,6 @@ language: cpp
 sudo: required
 group: edge
 
-services: 
-    - docker
 
 os:
 - linux
@@ -17,6 +15,13 @@ notifications:
     on_success: change
     on_failure: always
 
+before_script:
+- echo "OSX related"
+- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then nvm get head || true; fi
+- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then ./.travis/travis_prepare_osx.sh; fi
+- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo ./.travis/travis_prepare_linux.sh; fi
+
+
 before_script:
 - echo "OSX related"
 - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then nvm get head || true; fi
@@ -24,8 +29,8 @@ before_script:
 - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo ./.travis/travis_prepare_linux.sh;
   fi
 script:
-- 
-- python2 -m compileall -q .
+
+- python2 -m compileall -q . || echo "Python2 not found"
 - if type python3 > /dev/null; then python3 -m compileall -q . ; fi
 - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then ./.travis/travis_build_osx.sh; fi
 - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then ./.travis/travis_build_linux.sh; fi

.travis/travis_build_linux.sh

 #!/usr/bin/env bash
+
 #===============================================================================
 #
 #          FILE: travis_build_linux.sh
@@ -17,44 +18,58 @@
 #      REVISION:  ---
 #===============================================================================
 
-set -o nounset                              # Treat unset variables as an error
-set -e
+set -e -x
 
 PYTHON2="/usr/bin/python2"
 PYTHON3="/usr/bin/python3"
-MAKEFLAGS="-j4"
+MAKEFLAGS="-j`nproc`"
+
+
+if [ ! -n "$MAKE" ]; then
+    MAKE="make -j`nproc`"
+else
+    MAKE="$MAKE -j`nproc`"
+fi
+
+unset PYTHONPATH
 
 # Bug: `which python` returns /opt/bin/python* etc on travis. For which numpy
 # many not be available. Therefore, it is neccessary to use fixed path for
 # python executable.
 
+$PYTHON2 -m compileall -q .
+if type $PYTHON3 > /dev/null; then $PYTHON3 -m compileall -q . ; fi
+
+echo "Currently in `pwd`"
 (
-    $PYTHON2 -m compileall -q .
-    if type $PYTHON3 > /dev/null; then $PYTHON3 -m compileall -q . ; fi
+    mkdir -p _GSL_BUILD && cd _GSL_BUILD 
+    cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON2" ..
+    $MAKE && ctest --output-on-failure
+)
 
-    mkdir -p _GSL_BUILD && cd _GSL_BUILD && \
-        cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON2" ..
-    make && ctest --output-on-failure
-    cd .. # Now with boost.
+(
+    # Now with boost.
     mkdir -p _BOOST_BUILD && cd _BOOST_BUILD && \
         cmake -DWITH_BOOST=ON -DDEBUG=ON -DQUIET_MODE=ON -DPYTHON_EXECUTABLE="$PYTHON2" ..
-    make && ctest --output-on-failure
-    cd ..
-
-    # This is only applicable on linux build.
-    echo "Python3: Removed python2-networkx and install python3"
-    if type $PYTHON3 > /dev/null; then
-        sudo apt-get remove -qq python-networkx
-        sudo apt-get install -qq python3-networkx
+    $MAKE && ctest --output-on-failure
+)
+
+# This is only applicable on linux build.
+echo "Python3: Removed python2-networkx and install python3"
+if type $PYTHON3 > /dev/null; then
+    sudo apt-get remove -qq python-networkx
+    sudo apt-get install -qq python3-networkx
+    (
         mkdir -p _GSL_BUILD2 && cd _GSL_BUILD2 && \
             cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON3" ..
-        make && ctest --output-on-failure
-        cd .. # Now with BOOST and python3
+        $MAKE && ctest --output-on-failure
+    )
+    (
         mkdir -p _BOOST_BUILD2 && cd _BOOST_BUILD2 && \
             cmake -DWITH_BOOST=ON -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON3" ..
-        make && ctest --output-on-failure
-        cd .. && echo "All done"
-    else
-        echo "Python3 is not found. Build disabled"
-    fi
-)
+        $MAKE && ctest --output-on-failure
+    )
+    echo "All done"
+else
+    echo "Python3 is not found. Build disabled"
+fi

.travis/travis_build_osx.sh

@@ -21,19 +21,23 @@ set -o nounset                              # Treat unset variables as an error
 set -e
 
 (
+
+    # Make sure not to pick up python from /opt.
+    PATH=/usr/bin:/usr/local/bin:$PATH
     mkdir -p _GSL_BUILD && cd _GSL_BUILD \
         && cmake -DQUIET_MODE=ON -DDEBUG=ON \
         -DPYTHON_EXECUTABLE=`which python` ..
-    make && ctest --output-on-failure
+    make -j3 && ctest --output-on-failure
+
     cd .. # Now with boost.
     mkdir -p _BOOST_BUILD && cd _BOOST_BUILD \
         && cmake -DWITH_BOOST=ON -DDEBUG=ON \
         -DPYTHON_EXECUTABLE=`which python` ..
-    make && ctest --output-on-failure
+
+    make -j3 && ctest --output-on-failure
     cd ..
+    set +e
 
-    # Now test the brew formula
-    cd ~
-    brew tap BhallaLab/moose
-    brew install moose
 )
+set +e
+

.travis/travis_prepare_linux.sh

@@ -30,6 +30,6 @@ apt-get install -qq libgsl0-dev
 apt-get install -qq python-pip python3-pip
 apt-get install -qq libgraphviz-dev
 
-# Dependencies for NML2 
+# Dependencies for NML2
 apt-get install -qq python-scipy python3-scipy
-pip install pyNeuroML libNeuroML 
+#pip install pyNeuroML libNeuroML

.travis/travis_prepare_osx.sh

@@ -26,14 +26,19 @@ brew install gsl
 brew install hdf5
 brew install python
 brew install numpy
+brew install boost
+
 #brew outdated python || brew install python
 #brew outdated numpy || brew install homebrew/python/numpy
 brew unlink numpy && brew link numpy || echo "Failed to link numpy"
 # Numpy caveats
 mkdir -p $HOME/Library/Python/2.7/lib/python/site-packages
 echo 'import sys; sys.path.insert(1, "/usr/local/lib/python2.7/site-packages")' >> $HOME/Library/Python/2.7/lib/python/site-packages/homebrew.pth
+
+# To make sure that we do not pick python from /opt etc.
+PATH=/usr/local/bin:/usr/bin:$PATH
 # ensurepip
-#python -m ensurepip
-pip2 install matplotlib --user
-pip2 install pyNeuroML libNeuroML --user
-pip2 install scipy --user
+python -m ensurepip
+python -m pip install matplotlib --user
+python -m pip install pyNeuroML libNeuroML --user
+python -m pip install scipy --user

CMakeLists.txt

 set(CMAKE_LEGACY_CYGWIN_WIN32 0)
 cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
 
-project(moose-core)
+
+project(pymoose)
 
 if(COMMAND cmake_policy)
     cmake_policy(SET CMP0003 NEW)
@@ -12,7 +13,7 @@ if(COMMAND cmake_policy)
 endif(COMMAND cmake_policy)
 
 
-set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake_modules")
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake_modules")
 include(CheckCXXCompiler.cmake)
 include(CheckIncludeFileCXX)
 include(FindPkgConfig)
@@ -20,24 +21,29 @@ include(FindPkgConfig)
 # getgit revision number
 find_program( GIT_EXEC git )
 if(GIT_EXEC)
-    execute_process(COMMAND ${GIT_EXEC} rev-parse --short HEAD 
+    execute_process(
+        COMMAND ${GIT_EXEC} rev-parse --short HEAD
         OUTPUT_VARIABLE GIT_HEAD
         OUTPUT_STRIP_TRAILING_WHITESPACE
-        )
+    )
+else(GIT_EXEC)
+    set(GIT_HEAD 'HEAD')
+    message(STATUS "Couldn't fetch version from git repo" )
 endif()
 
 # If from command line, version info is not passed, use the git to generate a
 # version file. If GIT fails, use the previous known version.
 if(NOT VERSION_MOOSE)
     set(VERSION_MOOSE "3.2.0-${GIT_HEAD}")
-endif( )
+endif()
+
 add_definitions( -DMOOSE_VERSION="${VERSION_MOOSE}")
 message( STATUS "MOOSE Version ${VERSION_MOOSE}" )
 
 # Write VERSION to a file VERSION so that setup.cmake.py can use it.
 set(VERSION_FILE ${CMAKE_CURRENT_SOURCE_DIR}/python/VERSION)
-message(STATUS "+ Writing ${VERSION_MOOSE} to ${VERSION_FILE}" )
 file(WRITE ${VERSION_FILE} ${VERSION_MOOSE} )
+message(STATUS "| Writing ${VERSION_MOOSE} to ${VERSION_FILE}" )
 
 # This snippet is from LLVM project.
 # Sanity check our source directory to make sure that we are not trying to
@@ -121,10 +127,7 @@ endif()
 ################################### TARGETS ####################################
 
 add_library(libmoose SHARED basecode/main.cpp)
-
-if(DEBUG)
-    add_executable(moose.bin basecode/main.cpp)
-endif( )
+add_executable(moose.bin basecode/main.cpp)
 
 ################################### SETUP BUILD ################################
 
@@ -373,61 +376,94 @@ ELSE(MACOSX)
         )
 endif(MACOSX)
 
-if(DEBUG)
-    add_dependencies(moose.bin libmoose)
-    target_link_libraries(moose.bin moose ${CMAKE_DL_LIBS})
-    if( WITH_BOOST )
-        target_link_libraries( moose.bin ${Boost_LIBRARIES} )
-    endif( WITH_BOOST )
-endif()
+add_dependencies(moose.bin libmoose)
+target_link_libraries(moose.bin moose ${CMAKE_DL_LIBS})
+if( WITH_BOOST )
+    target_link_libraries( moose.bin ${Boost_LIBRARIES} )
+endif( WITH_BOOST )
 
 
 ######################### BUILD PYMOOSE ########################################
+# This target is built by pymoose/CMakeLists.txt file.
 add_subdirectory( pymoose )
 
-######################### INSTALL ##############################################
-
-if(DEBUG)
-    install(TARGETS moose.bin
-        DESTINATION bin
-        )
-
-    install(TARGETS libmoose
-        DESTINATION lib
-        )
-
-    install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/scripts/moose
-        DESTINATION bin
-        )
-endif( )
-
-# INSTALL python module.
-# This target is built by pymoose/CMakeLists.txt file. Using the --prefix option
 # always override debian default installation directory. It will be installed in
 # site-packages instead of dist-packages.
 # See https://bugs.launchpad.net/ubuntu/+source/python2.6/+bug/362570
 # HACK: Get platform information from python and use it to fix the layout.
-execute_process(
-    COMMAND ${PYTHON_EXECUTABLE} -mplatform OUTPUT_VARIABLE _platform_desc
+execute_process(COMMAND ${PYTHON_EXECUTABLE} -mplatform OUTPUT_VARIABLE _platform_desc)
+message(STATUS "Platform: ${_platform_desc}")
+
+# DISTUTILS_EXTRA_ARGS may come of top-level cmake script. On DEBIAN/UBUNTU, it
+# is most likely to be --install-layout=deb .
+set(EXTRA_ARGS "--prefix ${CMAKE_INSTALL_PREFIX} ${DISTUTILS_EXTRA_ARGS}")
+
+# On Debian/Ubuntu install using debian layout.
+# NOTE: Also create setup.cfg file which setup prefix and install-layout
+# suitable for DEBIAN systems.
+if(${_platform_desc} MATCHES ".*(Ubuntu|Debian).*")
+    list(APPEND EXTRA_ARGS "--install-layout=deb")
+    file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/python/setup.cfg
+         "[install]\nprefix=/usr\ninstall-layout=deb"
+       )
+endif()
+
+# Set PYMOOSE binary distribution build and install directories.
+# Target for creating bdist. This is handy for creating bdist for packaging.
+# Save the binary distribution (tar.gz) to PYMOOSE_BDIST_DIR.
+find_package(PythonInterp REQUIRED)
+if(NOT PYMOOSE_BDIST_DIR)
+    set(PYMOOSE_BDIST_DIR ${CMAKE_BINARY_DIR}/bdist)
+endif( )
+set(PYMOOSE_BDIST_INSTALL_DIR ${CMAKE_CURRENT_BINARY_DIR}/pymoose_bdist_install)
+file(MAKE_DIRECTORY ${PYMOOSE_BDIST_INSTALL_DIR})
+
+# We need a custom name for bdist; same on all platform.
+set(_platform "CMAKE" )
+set(PYMOOSE_BDIST_FILE ${PYMOOSE_BDIST_DIR}/pymoose-${VERSION_MOOSE}.${_platform}.tar.gz)
+message(STATUS "binary distribution file ${PYMOOSE_BDIST_FILE}")
+add_custom_target(bdist ALL DEPENDS  ${PYMOOSE_BDIST_FILE} )
+
+# Any command using setup.cmake.py must run in the same directory.
+add_custom_command( OUTPUT ${PYMOOSE_BDIST_FILE}
+    COMMAND ${PYTHON_EXECUTABLE} setup.cmake.py bdist_dumb -p ${_platform} 
+        -d ${PYMOOSE_BDIST_DIR}
+    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/python
+    COMMENT "bdist is saved to ${PYMOOSE_BDIST_DIR}"
+    VERBATIM
+    )
+add_custom_command(TARGET bdist POST_BUILD
+    COMMAND ${CMAKE_COMMAND} -E chdir ${PYMOOSE_BDIST_INSTALL_DIR} tar xvf ${PYMOOSE_BDIST_FILE}
+    COMMENT "Unarchiving bdist file ${PYMOOSE_BDIST_FILE} to ${PYMOOSE_BDIST_INSTALL_DIR}"
+    VERBATIM
     )
-message( STATUS "Platform ${_platform_desc}" )
 
+# Copy python files from source to current binary directory. Make sure to call
+# this before building bdist.
+file(GLOB_RECURSE PYTHON_SRCS "${CMAKE_SOURCE_DIR}/python/*")
+add_custom_target(copy_pymoose DEPENDS ${PYTHON_SRCS}
+    COMMAND ${CMAKE_COMMAND} -E copy_directory
+        ${CMAKE_CURRENT_SOURCE_DIR}/python ${CMAKE_CURRENT_BINARY_DIR}/python
+    COMMENT "Copying required python files and other files to build directory"
+    VERBATIM 
+    )
 
-set(EXTRA_ARGS "--prefix ${CMAKE_INSTALL_PREFIX}")
+add_dependencies( bdist copy_pymoose )
+add_dependencies( copy_pymoose _moose )
 
-# On Debian/Ubuntu install using debian layout
-if( ${_platform_desc} MATCHES ".*(Ubuntu|Debian).*" )
-    list( APPEND EXTRA_ARGS "--install-layout=deb" )
-endif( )
+######################### INSTALL ##############################################
 
-# If make is called with sudo, install in system directories. Otherwise use
-# --user to install in user home.
-install(CODE
-    "execute_process(
-        COMMAND ${PYTHON_EXECUTABLE} setup.cmake.py install ${EXTRA_ARGS} ${PYMOOSE_EXTRA_INSTALL_ARGS}
-        WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/python
-        )"
-        )
+install(TARGETS moose.bin DESTINATION bin CONFIGURATIONS Debug)
+install(TARGETS libmoose DESTINATION lib CONFIGURATIONS Debug)
+install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/scripts/moose
+    DESTINATION bin CONFIGURATIONS Debug
+    )
+
+# install pymoose bdist.
+install(DIRECTORY ${PYMOOSE_BDIST_INSTALL_DIR}/
+    DESTINATION ${CMAKE_INSTALL_PREFIX}
+    CONFIGURATIONS Release
+    )
 
 # Print message to start build process
 if(${CMAKE_BUILD_TOOL} MATCHES "make")
@@ -468,7 +504,7 @@ foreach( _test_script ${PY_TEST_SCRIPTS} )
         WORKING_DIRECTORY ${PYMOOSE_TEST_DIRECTORY}
         )
      set_tests_properties( ${_test_name}
-        PROPERTIES ENVIRONMENT "PYTHONPATH=${PROJECT_BINARY_DIR}/python"
+         PROPERTIES ENVIRONMENT "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}/python"
         )
 endforeach( )
 

pymoose/CMakeLists.txt

@@ -11,16 +11,22 @@ set(PYMOOSE_SRCS
     PyRun.cpp
     )
 
+# Build _moose.so in source directory and them copy everything to
+# current binary directory using cmake.
 add_library( _moose MODULE ${PYMOOSE_SRCS} )
-set(PYMOOSE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/python/moose")
+set(PYMOOSE_OUTPUT_DIRECTORY "${CMAKE_SOURCE_DIR}/python/moose")
 
 find_package(PythonInterp REQUIRED)
-execute_process( COMMAND ${PYTHON_EXECUTABLE} -c
-    "try: import importlib.machinery; print(importlib.machinery.EXTENSION_SUFFIXES[0])
-except Exception: pass"
+execute_process( COMMAND
+    ${PYTHON_EXECUTABLE} -c
+        "import importlib.machinery
+print(importlib.machinery.EXTENSION_SUFFIXES[-1])"
     OUTPUT_VARIABLE PYTHON_SO_EXTENSION
     OUTPUT_STRIP_TRAILING_WHITESPACE
     )
+if(NOT PYTHON_SO_EXTENSION)
+    set(PYTHON_SO_EXTENSION ".so")
+endif()
 message( STATUS "Python so extension ${PYTHON_SO_EXTENSION}" )
 
 find_package(NumPy REQUIRED)
@@ -43,7 +49,7 @@ set_target_properties(_moose PROPERTIES
     COMPILE_FLAGS "${PYTHON_INCLUDE_FLAGS}"
     LIBRARY_OUTPUT_DIRECTORY ${PYMOOSE_OUTPUT_DIRECTORY}
     PREFIX ""
-    SUFFIX ".so"
+    SUFFIX ${PYTHON_SO_EXTENSION}
     )
 
 if(NOT(PYTHON_SO_EXTENSION STREQUAL ""))
@@ -71,7 +77,7 @@ if(MACOSX)
     target_link_libraries(_moose
         ${SYSTEM_SHARED_LIBS}
         )
-ELSE(MACOSX)
+else(MACOSX)
     target_link_libraries(_moose
         "-Wl,--whole-archive"
         ${MOOSE_LIBRARIES}
@@ -81,25 +87,12 @@ ELSE(MACOSX)
         ${SYSTEM_SHARED_LIBS}
         )
 endif(MACOSX)
-
-# Make this target dependant on all python files in python folder.
-add_custom_target(copy_python_files
-    COMMAND ${CMAKE_COMMAND} -E copy_directory
-        ${CMAKE_SOURCE_DIR}/python ${CMAKE_BINARY_DIR}/python
-    COMMENT "Copying required python files and other files to build directory"
-    VERBATIM
-    )
-
-add_dependencies(_moose copy_python_files)
-
-
-# Print message at the end of build process.
-add_custom_command( TARGET _moose POST_BUILD 
+add_custom_command(TARGET _moose POST_BUILD
     COMMAND ${CMAKE_COMMAND} -E cmake_echo_color --cyan
-    "MOOSE python extention is successfully built. Now "
-    " 1. Run 'make install' to install it for single user. "
-    " 2. Run 'sudo make install' to install it system-wide. "
-    " "
-    "NOTE: Run 'pip uninstall moose' to uninstall moose."
+        "MOOSE python extention is successfully built. Now "
+        " Run 'sudo make install' to install it. "
+        " "
+        "NOTE: Run 'pip uninstall moose' to uninstall moose."
     VERBATIM
     )
+

python/moose/moose.py

 # -*- coding: utf-8 -*-
+from __future__ import print_function, division, absolute_import
 
 # Author: Subhasis Ray
 # Maintainer: Dilawar Singh, Harsha Rani, Upi Bhalla

python/setup.cmake.py

 # -*- coding: utf-8 -*-
+from __future__ import print_function
 
-"""setup.py:
-Script to install python targets.
-
-NOTE: This script is to be called by CMake. Not intended to be used standalone.
-
-"""
+# NOTE: This script is to be called by CMake. Not intended to be used standalone.
 
 __author__           = "Dilawar Singh"
 __copyright__        = "Copyright 2013, Dilawar Singh and NCBS Bangalore"
@@ -19,22 +15,23 @@ __status__           = "Development"
 import os
 import sys
 
-try:
-	from setuptools import setup
-except Exception as e:
-	from distutils.core import setup
+
+# NOTE: Though setuptool is preferred we use distutils.
+# 1. setuptool normalize VERSION even when it is compatible with PyPI
+# guidelines. This caused havoc on our OBS build.
+from distutils.core import setup
 
 script_dir = os.path.dirname( os.path.abspath( __file__ ) )
-version = '3.2pre1'
 
+# Version file must be available. It MUST be written by cmake. Or create
+# manually.
+with open( os.path.join( script_dir, 'VERSION'), 'r' ) as f:
+    version = f.read( )
+print( 'Got %s from VERSION file' % version )
 
-try:
-    with open( os.path.join( script_dir, 'VERSION'), 'r' ) as f:
-        version = f.read( )
-except Exception as e:
-    print( 'Failed to read VERSION %s' % e )
-    print( 'Using default %s' % version )
 
+# importlib is available only for python3.
+suffix = '.so'
 try:
     import importlib.machinery
     suffix = importlib.machinery.EXTENSION_SUFFIXES[0].split('.')[-1]
@@ -43,27 +40,20 @@ except Exception as e:
     suffix = '.so'
 
 setup(
-        name='pymoose',
-        version=version,
-        description='Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in)',
-        author='MOOSERes',
-        author_email='bhalla@ncbs.res.in',
-        maintainer='Dilawar Singh',
-        maintainer_email='dilawars@ncbs.res.in',
-        url='http://moose.ncbs.res.in',
-        packages=[
-            'rdesigneur'
-            , 'moose'
-            , 'moose.SBML'
-            , 'moose.neuroml'
-            , 'moose.neuroml2'
-            , 'moose.genesis'
-            , 'moose.chemUtil'
-            , 'moose.chemMerge'
-            ],
-	install_requires = [ 'python-libsbml', 'numpy' ],
-        package_dir = {
-            'moose' : 'moose', 'rdesigneur' : 'rdesigneur'
-            },
-        package_data = { 'moose' : ['_moose' + suffix, 'neuroml2/schema/NeuroMLCoreDimensions.xml'] },
-    )
+        name                   = 'pymoose',
+        version                = version,
+        description            = 'Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in)',
+        author                 = 'MOOSERes',
+        author_email           = 'bhalla@ncbs.res.in',
+        maintainer             = 'Dilawar Singh',
+        maintainer_email       = 'dilawars@ncbs.res.in',
+        url                    = 'http://moose.ncbs.res.in',
+        packages               = [ 'rdesigneur', 'moose'
+                                    , 'moose.SBML', 'moose.genesis'
+                                    , 'moose.neuroml', 'moose.neuroml2'
+                                    , 'moose.chemUtil', 'moose.chemMerge' 
+                                ],
+        install_requires       = [ 'python-libsbml', 'numpy' ],
+        package_dir            = { 'moose' : 'moose', 'rdesigneur' : 'rdesigneur' },
+        package_data           = { 'moose' : ['_moose' + suffix, 'neuroml2/schema/NeuroMLCoreDimensions.xml'] },
+        )

setup.py

 # -*- coding: utf-8 -*-
+from __future__ import print_function
 
 """setup.py: This
+NOT COMPLETE.
 scripts prepare MOOSE for PyPI.
 
 Last modified: Mon Jul 28, 2014  12:52AM