Added debian folder for launchpad.

debian/README.Debian

+moose for Debian
+----------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Dilawar <dilawars@ncbs.res.in>  Thu, 24 Jul 2014 16:41:58 +0530

debian/changelog

+moose (3.0.2) unstable; urgency=low
+
+  * Initial release 
+  * Feature-freeze release.
+  * trunk series. Experimental branch.
+  * 3.0.2 relase.
+  * Just packed with SBML and GSL-1.6 support.
+
+ -- Dilawar <dilawars@ncbs.res.in>  Sun, 05 July 2015 13:41:58 +0530

debian/compat

+9

debian/control

+Source: moose
+Section: science
+Priority: optional
+Maintainer: Dilawar Singh <dilawars@ncbs.res.in>
+Build-Depends: debhelper, cdbs, devscripts, cmake, python-setuptools, build-essential, doxygen, python-qt4, python-qt4-dev, libopenscenegraph-dev, python-sip-dev, libqt4-dev, libqt4-opengl-dev, libxml2-dev, libbz2-dev, python-dev, python-numpy, libhdf5-serial-dev, libgsl0-dev, python-qt4-gl
+Standards-Version: 3.9.5
+Homepage: http://moose.ncbs.res.in
+
+Package: moose-all
+Architecture: any
+Depends: moose-python, moose-gui, moose-moogli
+Description: MOOSE is the Multiscale Object-Oriented Simulation Environment
+ It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology.
+ .
+ MOOSE spans the range from single molecules to subcellular networks, from
+ single cells to neuronal networks, and to still larger systems.  MOOSE uses
+ Python for scripting compatibility with a large range of software and
+ analysis tools. It recognizes model definition standards including SBML,
+ NeuroML, and GENESIS model file formatsGallery
+ .
+ MOOSE is open source software, licensed under the LGPL (Lesser GNU Public
+ License). It has absolutely no warranty.
+ .
+ The MOOSE team is also participating in development of MOOGLI: a library and
+ standalone application for displaying time-course of activity of detailed 3-D
+ network models using OpenGL and also using OpenSceneGraph	
+
+
+Package: moose-core
+Architecture: any
+Depends: ${shlibs:Depends}
+Description: Core C++ part of MOOSE
+ .
+ Core MOOSE engine without any scripting support. For general use see moose-python, moose-gui packages. This is only useful on clusters.
+
+
+Package: moose-python
+Architecture: any
+Depends: ${shlibs:Depends}, python-numpy, python-matplotlib, python-nose, python-networkx, python-setuptools, python-suds
+Description: Python interface of MOOSE Simulator
+ .
+ This package installs python scripting interface.
+
+Package: moose-gui
+Architecture: any
+Depends: python-qt4, moose-python
+Description: GUI of moose
+ .
+ This package installs the GUI frontend of MOOSE neural simulator.
+
+Package: moose-moogli
+Architecture: any
+Depends: ${shlibs:Depends}, python-qt4-gl, python-sip, libqt4-gui, openscenegraph, moose-gui
+Suggests: moose-python
+Description: Visualizer for neural simulator
+ .
+ Moogli (a sister project of MOOSE) is a simulator independent openGL based
+ visualization tool for neural simulations. Moogli can visualize morphology of
+ single/multiple neurons or network of neurons, and can also visualize activity
+ in these cells. 
+
+Package: moose-doc
+Architecture: any
+Description: User and developer documents of MOOSE neural simulator
+ .
+ This package installs user-manuals, tutorials, and developer document of MOOSE simulator.

debian/copyright

+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: moose
+Source: http://moose.ncbs.res.in
+
+Files: *
+Copyright: 2007-15 Upinder Bhalla 
+           2009-13 Subhasis Ray
+           2013-15 Dilawar Singh
+           2014-15 Aviral Goel
+
+License: LGPL-3.0+
+
+Files: debian/*
+Copyright: 2014 Dilawar Singh <dilawars@ncbs.res.in>
+License: LGPL-3.0+
+
+License: LGPL-3.0+
+ This package is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.

debian/moose-core.install

+usr/bin/moose.bin
+usr/bin/moose

debian/moose-dev.install

+usr/bin/moose*
+usr/lib/libmoose*

debian/moose-gui.install

+usr/lib/moose/gui
+usr/bin/moosegui

debian/moose-moogli.install

+usr/share/moogli/moogli*.tar.gz

debian/moose-moogli.postinst

+#!/bin/sh
+# postinst script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+#        * <postinst> `configure' <most-recently-configured-version>
+#        * <old-postinst> `abort-upgrade' <new version>
+#        * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+#          <new-version>
+#        * <postinst> `abort-remove'
+#        * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+#          <failed-install-package> <version> `removing'
+#          <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+    configure)
+        mkdir -p /etc/moogli
+        cd /usr/share/moogli 
+        tar xzvf moogli-1.0.1.tar.gz
+        cd moogli-1.0.1
+        python setup-moogli.py install --install-layout=deb --record /etc/moogli/installed_files.txt
+    ;;
+
+    abort-upgrade|abort-remove|abort-deconfigure)
+    ;;
+
+    *)
+        echo "postinst called with unknown argument \`$1'" >&2
+        exit 1
+    ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0

debian/moose-moogli.prerm

+#!/bin/sh
+# prerm script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+#        * <prerm> `remove'
+#        * <old-prerm> `upgrade' <new-version>
+#        * <new-prerm> `failed-upgrade' <old-version>
+#        * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+#        * <deconfigured's-prerm> `deconfigure' `in-favour'
+#          <package-being-installed> <version> `removing'
+#          <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+    remove|upgrade|deconfigure)
+
+	if [ -d /usr/lib/moogli ]; then
+            rm -R /usr/lib/moogli
+	fi
+        if [ -d /etc/moogli ]; then
+            ( 
+            cd /etc/moogli
+            while read -r line
+            do
+                # get the egg directory and remove it.
+                dirname=`expr $line : '\(.*moogli-.*egg\)'`
+                if [ -d "$dirname" ]; then
+                    rm -rf $dirname
+                fi
+                # This line is usually redundant now.
+                if [ -f $line ]; then rm -f $line ; fi
+            done < installed_files.txt
+            )
+            rm -R /etc/moogli
+        fi
+    ;;
+
+    failed-upgrade)
+    ;;
+
+    *)
+        echo "prerm called with unknown argument \`$1'" >&2
+        exit 1
+    ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0

debian/moose-python.install

+usr/share/moose/moose*.tar.gz

debian/moose-python.postinst

+#!/bin/sh
+# postinst script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+#        * <postinst> `configure' <most-recently-configured-version>
+#        * <old-postinst> `abort-upgrade' <new version>
+#        * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+#          <new-version>
+#        * <postinst> `abort-remove'
+#        * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+#          <failed-install-package> <version> `removing'
+#          <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+    configure)
+        ( 
+        mkdir -p /etc/moose
+        cd /usr/share/moose 
+        tar xzvf moose-3.0.2.tar.gz
+        cd moose-3.0.2 
+        python setup-moose.py install --install-layout=deb --record /etc/moose/installed_files.txt
+        )
+    ;;
+
+    abort-upgrade|abort-remove|abort-deconfigure)
+    ;;
+
+    *)
+        echo "postinst called with unknown argument \`$1'" >&2
+        exit 1
+    ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0

debian/moose-python.prerm

+#!/bin/sh
+# prerm script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+#        * <prerm> `remove'
+#        * <old-prerm> `upgrade' <new-version>
+#        * <new-prerm> `failed-upgrade' <old-version>
+#        * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+#        * <deconfigured's-prerm> `deconfigure' `in-favour'
+#          <package-being-installed> <version> `removing'
+#          <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+case "$1" in
+    remove|upgrade|deconfigure)
+	if [ -d /etc/moose ]; then
+            (
+                cd /etc/moose 
+                while read -r line
+                do
+                    # get the egg directory and remove it.
+                    dirname=`expr $line : '\(.*moose-.*egg\)'`
+                    if [ -d "$dirname" ]; then
+                        rm -rf $dirname
+                    fi
+                    # This line is usually redundant now.
+                    if [ -f $line ]; then rm -f $line ; fi
+                done < installed_files.txt
+            )
+            rm -R /etc/moose
+	fi
+
+        if [ -d /usr/share/moose ]; then
+            rm -R /usr/share/moose
+        fi
+    ;;
+
+    failed-upgrade)
+    ;;
+
+    *)
+        echo "prerm called with unknown argument \`$1'" >&2
+        exit 1
+    ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0

debian/rules

+#!/usr/bin/make -f
+
+# export DH_VERBOSE=1
+export BUILD_DIR_MOOSE=_build
+NPROCS := 1
+OS := $(shell uname)
+ifeq ($J,)
+    ifeq ($(OS),Linux)
+    NPROCS := $(shell grep -c ^processor /proc/cpuinfo)
+else ifeq ($(OS),Darwin)
+    NPROCS := $(shell system_profiler | awk '/Number of CPUs/ {print $$4}{next;}')
+endif # $(OS)
+else
+    NPROCS := $J
+endif # $J
+
+MAKEFLAGS=-j$(NPROCS)
+
+export PYTHONPATH=$(shell pwd)/../debian/tmp/$(PYTHON_LIBS))
+
+## Here goes the debian make.
+
+%:
+	dh "$@" --parallel
+
+override_dh_auto_clean:
+	rm -rf $(BUILD_DIR_MOOSE)
+	dh_auto_clean --buildsystem=cmake
+
+# consider using -DUSE_VERSIONED_DIR=ON if backporting
+override_dh_auto_configure:
+	mkdir -p $(BUILD_DIR_MOOSE)
+	cd $(BUILD_DIR_MOOSE) && cmake -DDEBUG=OFF -DBUILD_MOOGLI=ON -DCMAKE_VERBOSE_MAKEFILE=OFF \
+	    -DCMAKE_INSTALL_PREFIX=../debian/tmp/usr ..
+
+override_dh_auto_build:
+	cd $(BUILD_DIR_MOOSE) && make VERBOSE=1 #-j${NPROCS}
+
+
+override_dh_auto_install:
+	# Distable python install
+	cd $(BUILD_DIR_MOOSE) && make install 
+
+override_dh_auto_test:
+	cd $(BUILD_DIR_MOOSE) && make test
+
+override_dh_shlibdeps:
+	dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info