From 20fbde5e9a01451d3dc29ae4b9d973166e60c60e Mon Sep 17 00:00:00 2001
From: Dilawar Singh <dilawars@ncbs.res.in>
Date: Tue, 4 Aug 2015 17:26:30 +0530
Subject: [PATCH] Added debian folder for launchpad.
---
debian/README.Debian | 6 ++++
debian/changelog | 9 +++++
debian/compat | 1 +
debian/control | 66 ++++++++++++++++++++++++++++++++++++
debian/copyright | 33 ++++++++++++++++++
debian/moose-core.install | 2 ++
debian/moose-dev.install | 2 ++
debian/moose-doc.install | 0
debian/moose-gui.install | 2 ++
debian/moose-moogli.install | 1 +
debian/moose-moogli.postinst | 44 ++++++++++++++++++++++++
debian/moose-moogli.prerm | 58 +++++++++++++++++++++++++++++++
debian/moose-python.install | 1 +
debian/moose-python.postinst | 46 +++++++++++++++++++++++++
debian/moose-python.prerm | 57 +++++++++++++++++++++++++++++++
debian/rules | 48 ++++++++++++++++++++++++++
16 files changed, 376 insertions(+)
create mode 100644 debian/README.Debian
create mode 100644 debian/changelog
create mode 100644 debian/compat
create mode 100644 debian/control
create mode 100644 debian/copyright
create mode 100644 debian/moose-core.install
create mode 100644 debian/moose-dev.install
create mode 100644 debian/moose-doc.install
create mode 100644 debian/moose-gui.install
create mode 100644 debian/moose-moogli.install
create mode 100755 debian/moose-moogli.postinst
create mode 100755 debian/moose-moogli.prerm
create mode 100644 debian/moose-python.install
create mode 100755 debian/moose-python.postinst
create mode 100755 debian/moose-python.prerm
create mode 100755 debian/rules
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 00000000..989036c4
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,6 @@
+moose for Debian
+----------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Dilawar <dilawars@ncbs.res.in> Thu, 24 Jul 2014 16:41:58 +0530
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 00000000..8e3e6829
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,9 @@
+moose (3.0.2) unstable; urgency=low
+
+ * Initial release
+ * Feature-freeze release.
+ * trunk series. Experimental branch.
+ * 3.0.2 relase.
+ * Just packed with SBML and GSL-1.6 support.
+
+ -- Dilawar <dilawars@ncbs.res.in> Sun, 05 July 2015 13:41:58 +0530
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 00000000..ec635144
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 00000000..9c0ebf67
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,66 @@
+Source: moose
+Section: science
+Priority: optional
+Maintainer: Dilawar Singh <dilawars@ncbs.res.in>
+Build-Depends: debhelper, cdbs, devscripts, cmake, python-setuptools, build-essential, doxygen, python-qt4, python-qt4-dev, libopenscenegraph-dev, python-sip-dev, libqt4-dev, libqt4-opengl-dev, libxml2-dev, libbz2-dev, python-dev, python-numpy, libhdf5-serial-dev, libgsl0-dev, python-qt4-gl
+Standards-Version: 3.9.5
+Homepage: http://moose.ncbs.res.in
+
+Package: moose-all
+Architecture: any
+Depends: moose-python, moose-gui, moose-moogli
+Description: MOOSE is the Multiscale Object-Oriented Simulation Environment
+ It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology.
+ .
+ MOOSE spans the range from single molecules to subcellular networks, from
+ single cells to neuronal networks, and to still larger systems. MOOSE uses
+ Python for scripting compatibility with a large range of software and
+ analysis tools. It recognizes model definition standards including SBML,
+ NeuroML, and GENESIS model file formatsGallery
+ .
+ MOOSE is open source software, licensed under the LGPL (Lesser GNU Public
+ License). It has absolutely no warranty.
+ .
+ The MOOSE team is also participating in development of MOOGLI: a library and
+ standalone application for displaying time-course of activity of detailed 3-D
+ network models using OpenGL and also using OpenSceneGraph
+
+
+Package: moose-core
+Architecture: any
+Depends: ${shlibs:Depends}
+Description: Core C++ part of MOOSE
+ .
+ Core MOOSE engine without any scripting support. For general use see moose-python, moose-gui packages. This is only useful on clusters.
+
+
+Package: moose-python
+Architecture: any
+Depends: ${shlibs:Depends}, python-numpy, python-matplotlib, python-nose, python-networkx, python-setuptools, python-suds
+Description: Python interface of MOOSE Simulator
+ .
+ This package installs python scripting interface.
+
+Package: moose-gui
+Architecture: any
+Depends: python-qt4, moose-python
+Description: GUI of moose
+ .
+ This package installs the GUI frontend of MOOSE neural simulator.
+
+Package: moose-moogli
+Architecture: any
+Depends: ${shlibs:Depends}, python-qt4-gl, python-sip, libqt4-gui, openscenegraph, moose-gui
+Suggests: moose-python
+Description: Visualizer for neural simulator
+ .
+ Moogli (a sister project of MOOSE) is a simulator independent openGL based
+ visualization tool for neural simulations. Moogli can visualize morphology of
+ single/multiple neurons or network of neurons, and can also visualize activity
+ in these cells.
+
+Package: moose-doc
+Architecture: any
+Description: User and developer documents of MOOSE neural simulator
+ .
+ This package installs user-manuals, tutorials, and developer document of MOOSE simulator.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 00000000..48013513
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,33 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: moose
+Source: http://moose.ncbs.res.in
+
+Files: *
+Copyright: 2007-15 Upinder Bhalla
+ 2009-13 Subhasis Ray
+ 2013-15 Dilawar Singh
+ 2014-15 Aviral Goel
+
+License: LGPL-3.0+
+
+Files: debian/*
+Copyright: 2014 Dilawar Singh <dilawars@ncbs.res.in>
+License: LGPL-3.0+
+
+License: LGPL-3.0+
+ This package is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
diff --git a/debian/moose-core.install b/debian/moose-core.install
new file mode 100644
index 00000000..1cb49585
--- /dev/null
+++ b/debian/moose-core.install
@@ -0,0 +1,2 @@
+usr/bin/moose.bin
+usr/bin/moose
diff --git a/debian/moose-dev.install b/debian/moose-dev.install
new file mode 100644
index 00000000..34534c36
--- /dev/null
+++ b/debian/moose-dev.install
@@ -0,0 +1,2 @@
+usr/bin/moose*
+usr/lib/libmoose*
diff --git a/debian/moose-doc.install b/debian/moose-doc.install
new file mode 100644
index 00000000..e69de29b
diff --git a/debian/moose-gui.install b/debian/moose-gui.install
new file mode 100644
index 00000000..ba3a0386
--- /dev/null
+++ b/debian/moose-gui.install
@@ -0,0 +1,2 @@
+usr/lib/moose/gui
+usr/bin/moosegui
diff --git a/debian/moose-moogli.install b/debian/moose-moogli.install
new file mode 100644
index 00000000..2fc6202a
--- /dev/null
+++ b/debian/moose-moogli.install
@@ -0,0 +1 @@
+usr/share/moogli/moogli*.tar.gz
diff --git a/debian/moose-moogli.postinst b/debian/moose-moogli.postinst
new file mode 100755
index 00000000..0624d9c3
--- /dev/null
+++ b/debian/moose-moogli.postinst
@@ -0,0 +1,44 @@
+#!/bin/sh
+# postinst script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postinst> `configure' <most-recently-configured-version>
+# * <old-postinst> `abort-upgrade' <new version>
+# * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+# <new-version>
+# * <postinst> `abort-remove'
+# * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+# <failed-install-package> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ configure)
+ mkdir -p /etc/moogli
+ cd /usr/share/moogli
+ tar xzvf moogli-1.0.1.tar.gz
+ cd moogli-1.0.1
+ python setup-moogli.py install --install-layout=deb --record /etc/moogli/installed_files.txt
+ ;;
+
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/moose-moogli.prerm b/debian/moose-moogli.prerm
new file mode 100755
index 00000000..5bbe65c6
--- /dev/null
+++ b/debian/moose-moogli.prerm
@@ -0,0 +1,58 @@
+#!/bin/sh
+# prerm script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <prerm> `remove'
+# * <old-prerm> `upgrade' <new-version>
+# * <new-prerm> `failed-upgrade' <old-version>
+# * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+# * <deconfigured's-prerm> `deconfigure' `in-favour'
+# <package-being-installed> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ remove|upgrade|deconfigure)
+
+ if [ -d /usr/lib/moogli ]; then
+ rm -R /usr/lib/moogli
+ fi
+ if [ -d /etc/moogli ]; then
+ (
+ cd /etc/moogli
+ while read -r line
+ do
+ # get the egg directory and remove it.
+ dirname=`expr $line : '\(.*moogli-.*egg\)'`
+ if [ -d "$dirname" ]; then
+ rm -rf $dirname
+ fi
+ # This line is usually redundant now.
+ if [ -f $line ]; then rm -f $line ; fi
+ done < installed_files.txt
+ )
+ rm -R /etc/moogli
+ fi
+ ;;
+
+ failed-upgrade)
+ ;;
+
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/moose-python.install b/debian/moose-python.install
new file mode 100644
index 00000000..0043ee3c
--- /dev/null
+++ b/debian/moose-python.install
@@ -0,0 +1 @@
+usr/share/moose/moose*.tar.gz
diff --git a/debian/moose-python.postinst b/debian/moose-python.postinst
new file mode 100755
index 00000000..43a7ebef
--- /dev/null
+++ b/debian/moose-python.postinst
@@ -0,0 +1,46 @@
+#!/bin/sh
+# postinst script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postinst> `configure' <most-recently-configured-version>
+# * <old-postinst> `abort-upgrade' <new version>
+# * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+# <new-version>
+# * <postinst> `abort-remove'
+# * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+# <failed-install-package> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ configure)
+ (
+ mkdir -p /etc/moose
+ cd /usr/share/moose
+ tar xzvf moose-3.0.2.tar.gz
+ cd moose-3.0.2
+ python setup-moose.py install --install-layout=deb --record /etc/moose/installed_files.txt
+ )
+ ;;
+
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/moose-python.prerm b/debian/moose-python.prerm
new file mode 100755
index 00000000..fb54a154
--- /dev/null
+++ b/debian/moose-python.prerm
@@ -0,0 +1,57 @@
+#!/bin/sh
+# prerm script for moose
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <prerm> `remove'
+# * <old-prerm> `upgrade' <new-version>
+# * <new-prerm> `failed-upgrade' <old-version>
+# * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+# * <deconfigured's-prerm> `deconfigure' `in-favour'
+# <package-being-installed> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+case "$1" in
+ remove|upgrade|deconfigure)
+ if [ -d /etc/moose ]; then
+ (
+ cd /etc/moose
+ while read -r line
+ do
+ # get the egg directory and remove it.
+ dirname=`expr $line : '\(.*moose-.*egg\)'`
+ if [ -d "$dirname" ]; then
+ rm -rf $dirname
+ fi
+ # This line is usually redundant now.
+ if [ -f $line ]; then rm -f $line ; fi
+ done < installed_files.txt
+ )
+ rm -R /etc/moose
+ fi
+
+ if [ -d /usr/share/moose ]; then
+ rm -R /usr/share/moose
+ fi
+ ;;
+
+ failed-upgrade)
+ ;;
+
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 00000000..50a253ef
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,48 @@
+#!/usr/bin/make -f
+
+# export DH_VERBOSE=1
+export BUILD_DIR_MOOSE=_build
+NPROCS := 1
+OS := $(shell uname)
+ifeq ($J,)
+ ifeq ($(OS),Linux)
+ NPROCS := $(shell grep -c ^processor /proc/cpuinfo)
+else ifeq ($(OS),Darwin)
+ NPROCS := $(shell system_profiler | awk '/Number of CPUs/ {print $$4}{next;}')
+endif # $(OS)
+else
+ NPROCS := $J
+endif # $J
+
+MAKEFLAGS=-j$(NPROCS)
+
+export PYTHONPATH=$(shell pwd)/../debian/tmp/$(PYTHON_LIBS))
+
+## Here goes the debian make.
+
+%:
+ dh "$@" --parallel
+
+override_dh_auto_clean:
+ rm -rf $(BUILD_DIR_MOOSE)
+ dh_auto_clean --buildsystem=cmake
+
+# consider using -DUSE_VERSIONED_DIR=ON if backporting
+override_dh_auto_configure:
+ mkdir -p $(BUILD_DIR_MOOSE)
+ cd $(BUILD_DIR_MOOSE) && cmake -DDEBUG=OFF -DBUILD_MOOGLI=ON -DCMAKE_VERBOSE_MAKEFILE=OFF \
+ -DCMAKE_INSTALL_PREFIX=../debian/tmp/usr ..
+
+override_dh_auto_build:
+ cd $(BUILD_DIR_MOOSE) && make VERBOSE=1 #-j${NPROCS}
+
+
+override_dh_auto_install:
+ # Distable python install
+ cd $(BUILD_DIR_MOOSE) && make install
+
+override_dh_auto_test:
+ cd $(BUILD_DIR_MOOSE) && make test
+
+override_dh_shlibdeps:
+ dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info
--
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