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Commit 62ae8101 authored by Eleni Mathioulaki's avatar Eleni Mathioulaki
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fix(CI): adjust kernel creation script to new Python version

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create_JupyterLab_kernel.sh
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...@@ -37,7 +37,7 @@ cp $INSTALLATION_ROOT/spack/var/spack/environments/$EBRAINS_SPACK_ENV/load_env.s ...@@ -37,7 +37,7 @@ cp $INSTALLATION_ROOT/spack/var/spack/environments/$EBRAINS_SPACK_ENV/load_env.s
# and the location of python modules installed in the base docker Collab image # and the location of python modules installed in the base docker Collab image
cat <<EOF >> $KERNEL_PATH/bin/env.sh cat <<EOF >> $KERNEL_PATH/bin/env.sh
export PATH=\$PATH:/opt/app-root/src/.local/bin export PATH=\$PATH:/opt/app-root/src/.local/bin
export PYTHONPATH=\$PYTHONPATH:/opt/app-root/src/.local/lib/python3.8/site-packages:/usr/local/lib/python3.8/dist-packages export PYTHONPATH=\$PYTHONPATH:/opt/conda/lib/python3.11/site-packages
export R_LIBS_USER=/opt/app-root/src/.local/lib/R/site-library export R_LIBS_USER=/opt/app-root/src/.local/lib/R/site-library
mkdir -p \$R_LIBS_USER mkdir -p \$R_LIBS_USER
export R_LIBS=\$R_LIBS_USER:\$R_LIBS export R_LIBS=\$R_LIBS_USER:\$R_LIBS
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