Merge branch 'fix-11' into 'master'

Add missing dependencies for LFPy. Version 2.2.3->2.2.6

Closes #11

See merge request technical-coordination/project-internal/devops/platform/ebrains-spack-builds!77

packages/py-lfpy/package.py

@@ -7,14 +7,14 @@ class PyLfpy(PythonPackage):
     """
 
     homepage = 'https://LFPy.readthedocs.io'
-    pypi = "LFPy/LFPy-2.2.3.tar.gz"
+    pypi = "LFPy/LFPy-2.2.6.tar.gz"
     git = 'https://github.com/LFPy/LFPy.git'
 
     maintainers = ['espenhgn']
 
-    version('2.2.3', sha256='fc0a3b784621d27cffabe4b6bcc13724f338c1dd')
+    version('2.2.6', sha256='105046db3628c6f72a6ab96ee8ac0f4833bf8eee428dcee50cb7f2926b755966')
 
-    depends_on('python@3.6:', type=('build', 'run'))
+    depends_on('python@3.7:', type=('build', 'run'))
     depends_on('py-pip', type='build')
     depends_on('py-h5py', type=('build', 'run'))
     depends_on('py-matplotlib', type=('build', 'run'))
@@ -24,5 +24,5 @@ class PyLfpy(PythonPackage):
     depends_on('py-setuptools', type=('build', 'run'))
     depends_on('py-cython', type=('build', 'run'))
     depends_on('neuron@7.7.2:', type=('build', 'run'))
-    depends_on('py-lfpykit@0.3:', type=('build', 'run'))
+    depends_on('py-lfpykit@0.4:', type=('build', 'run'))
     depends_on('py-pytest', type='test')

packages/py-lfpykit/package.py

+from spack import *
+
+
+class PyLfpykit(PythonPackage):
+    """A Python package containing different electrostatic forward models for
+    computing extracellular signals from multicompartment neurons
+    """
+
+    homepage = 'https://LFPykit.readthedocs.io'
+    pypi = "LFPykit/LFPykit-0.4.tar.gz"
+    git = 'https://github.com/LFPy/LFPykit.git'
+
+    maintainers = ['espenhgn']
+
+    version('0.4', sha256='ce92f5a987535ee72a76644bac90393eaa669d952f493dc388f3deb1c36f474d')
+
+    depends_on('python@3.7:', type=('build', 'run'))
+    depends_on('py-pip', type='build')
+    depends_on('py-numpy', type=('build', 'run'))
+    depends_on('py-scipy', type=('build', 'run'))
+    depends_on('py-setuptools', type=('build', 'run'))
+    depends_on('py-meautility@1.5.0', type=('build', 'run'))
+    depends_on('py-pytest', type='test')

packages/py-meautility/package.py

+from spack import *
+
+
+class PyMeautility(PythonPackage):
+    """Python package for multi-electrode array (MEA) handling and stimulation.
+    """
+
+    homepage = 'https://meautility.readthedocs.io'
+    pypi = "MEAutility/MEAutility-1.5.0.tar.gz"
+    git = 'https://github.com/alejoe91/MEAutility.git'
+
+    maintainers = ['alejoe91']
+
+    version('1.5.0', sha256='6bad687c2cb4d3668f15cddf247b06f4da56e9e4d80d6935977d003dbc1cb31b')
+
+    depends_on('python@3.7:', type=('build', 'run'))
+    depends_on('py-pip', type='build')
+    depends_on('py-matplotlib', type=('build', 'run'))
+    depends_on('py-numpy', type=('build', 'run'))
+    depends_on('py-pyyaml', type=('build', 'run'))
+    depends_on('py-setuptools', type=('build', 'run'))
+    depends_on('py-pytest', type='test')

spack.yaml

@@ -30,9 +30,9 @@ spack:
     - py-formencode %gcc@10.3.0
     - tvb-framework ^binutils+ld+gold %gcc@10.3.0
     - pynn-brainscales@2.0-rc1 ^log4cxx@0.10.0 ^googletest@1.11.0:+gmock %gcc@10.3.0
-    #- py-cerebstats %gcc@10.3.0 
+    #- py-cerebstats %gcc@10.3.0
     #- py-cerebunit %gcc@10.3.0
-    - py-cerebrus %gcc@10.3.0 
+    - py-cerebrus %gcc@10.3.0
     - py-sciunit@0.2.5.1 %gcc@10.3.0
     - py-quantities-scidash@0.12.4.3 %gcc@10.3.0
     #- py-ebrains-drive@0.4.0 %gcc@10.3.0
@@ -42,10 +42,10 @@ spack:
     #- py-neurom@1.4.10 %gcc@10.3.0
     #- py-morphio@3.1.1 %gcc@10.3.0
     - py-hippounit@1.3.6 %gcc@10.3.0
-    - py-efel@4.0.4 %gcc@10.3.0   
+    - py-efel@4.0.4 %gcc@10.3.0
     - py-hbp-neuromorphic-platform@0.9.2 %gcc@10.3.0
     #- py-torch~onnx_ml~rocm~tensorpipe~mpi~distributed ^protobuf@:3.17.999 %gcc@10.3.0
-    #- py-lfpy@2.2.3 %gcc@10.3.0
+    - py-lfpy@2.2.6 %gcc@10.3.0
     #- biobb-common %gcc@10.3.0
     # demo for codejam12
     #- funniest1022 %gcc@10.3.0