Commits · c6c6d12acea4bca05fdf497912f7d8431e61472c · Harry Carey / PyNutil

May 27, 2023
- Added create_test_data.py · c6c6d12a
  Sharon Yates authored 1 year ago
  
  c6c6d12a
May 25, 2023
- Testing with Harry, clean up · 15d81c39
  Sharon Yates authored 1 year ago
  
  15d81c39
- moved build_quantifier logic into __init__ · 300429c4
  Harry Carey authored 1 year ago
  
  300429c4
- added emoji · 07264a86
  Harry Carey authored 1 year ago
  
  07264a86
May 24, 2023
- added basics of object based analysis · 1e51888c
  Harry Carey authored 1 year ago
  
  1e51888c
- fixed references to redundant multithreaded functions · 3f0f8df4
  Harry Carey authored 1 year ago
  
  3f0f8df4
- made multithreaded functions the default and removed non multithreaded versions · 98869b93
  Harry Carey authored 1 year ago
  
  98869b93
- created function get_coordinates and added the ability to provide settings json · 11892cb6
  Harry Carey authored 1 year ago
  
  11892cb6
May 23, 2023
- added testOOP as a temporary file while building the PyNutil class · c63310dc
  Harry Carey authored 1 year ago
  
  c63310dc
- reformatted with black and added metadata loader · 922d1c08
  Harry Carey authored 1 year ago
  
  922d1c08
- Clean up · 7f2bf0ad
  Sharon Yates authored 1 year ago
  
  7f2bf0ad
- Add region name and colours to area reports · a27a578b
  Sharon Yates authored 1 year ago
  
  a27a578b
- Clean up · 5fd21f1f
  Sharon Yates authored 1 year ago
  
  5fd21f1f
- Add clear label to first row in all atlas colour files · 1b3d3436
  Sharon Yates authored 1 year ago
  
  1b3d3436
- FilesinDirectory function · 83bc3fd2
  Sharon Yates authored 1 year ago
```
Create a list of flat file names
```
  83bc3fd2
May 22, 2023
- Flat to array fix · 37b10118
  Sharon Yates authored 1 year ago
  
  37b10118
- Create flat to array function · 8641963b
  Sharon Yates authored 1 year ago
  
  8641963b
- cleanup testing_openflatfile.py · f9f2acd2
  Sharon Yates authored 1 year ago
  
  f9f2acd2
- Working with flat files · d7d9d839
  Sharon Yates authored 1 year ago
  
  d7d9d839
May 16, 2023
- Update test1.json · 7202ac4c
  Sharon Yates authored 1 year ago
  
  7202ac4c
- Standardise atlas input and update test jsons · 83448403
  Sharon Yates authored 1 year ago
```
"allenID" changed to idx.
```
  83448403
- Create cvs for allen 2015, 2017, 2022 and WHS v2, v3, v4 · d7e73d7e
  Sharon Yates authored 1 year ago
```
Write and run function for correctly formatted label file
```
  d7e73d7e
May 12, 2023
- Reformat allen and WHS label files · d9f8a7f1
  Sharon Yates authored 1 year ago
```
Write function to reformat label files so they are compatible with PyNutil
```
  d9f8a7f1
- Prep for reading flat files · 1e99ccc9
  Sharon Yates authored 1 year ago
  
  1e99ccc9
- Add label files, reformat label file · ddd51ef9
  Sharon Yates authored 1 year ago
  
  ddd51ef9
May 11, 2023
- Move functions to read_and_write.py · 63073f73
  Sharon Yates authored 1 year ago
  
  63073f73
- Restructure functions into themes py files · 8d8a9e54
  Sharon Yates authored 1 year ago
```
Continued
```
  8d8a9e54
- Create SaveDataframeasCSV function · eb80e04c
  Sharon Yates authored 1 year ago
  
  eb80e04c
- Create PixelCountPerRegion function · eedb4afa
  Sharon Yates authored 1 year ago
  
  eedb4afa
- Cleap up, comments, etc · add3d2c2
  Sharon Yates authored 1 year ago
  
  add3d2c2
May 10, 2023
- Create structure for testing · 6e4ac639
  Sharon Yates authored 1 year ago
  
  6e4ac639
- Reorganise functions into themed py files · 4c1d2dc7
  Sharon Yates authored 1 year ago
  
  4c1d2dc7
- Support for input in json format, continued · 664d0c18
  Sharon Yates authored 1 year ago
  
  664d0c18
May 09, 2023
- Support for input in json formalt · 5dac7235
  Sharon Yates authored 1 year ago
  
  5dac7235
- Restructure and cleanup code, OOP · 9b9862c4
  Sharon Yates authored 1 year ago
  
  9b9862c4
- Delete folder_of_segmentations_to_meshview_sharon_comments.py · ef46b825
  Sharon Yates authored 1 year ago
  
  ef46b825
- Add comments · c510c835
  Sharon Yates authored 1 year ago
  
  c510c835
May 05, 2023
- Integrate multithreaded file · d8c21852
  Sharon Yates authored 1 year ago
  
  d8c21852
- added multithreading demo · 4259be22
  polarbean authored 1 year ago
  
  4259be22
May 04, 2023
- Merge pull request #5 from Neural-Systems-at-UIO/development · bcccdd8b
  Sharon Yates authored 1 year ago
```
Pixel counts per AllenID
```
  bcccdd8b