Clean up

test/test5_NOP_s037.json

@@ -2,9 +2,9 @@
     "label_path": "../annotation_volumes/allen2017_colours.csv",
     "segmentation_folder": "../test_data/ttA_2877_NOP_s037_seg",
     "alignment_json": "../test_data/ttA_2877_NOP_horizontal_final_2017.json",
-    "nonlinear": true,
+    "nonlinear": false,
     "colour": [0, 0, 255],
     "points_json_path": "../outputs/test5_points.json",
-    "counts_per_label_name": "../outputs/test5_counts_per_allenID_2017.csv"
+    "counts_per_label_name": "../outputs/test5_counts_per_allenID_2017_false.csv"
 }
 

test/test6_artifical.json

+{   "volume_path": "../annotation_volumes/annotation_10_reoriented_2017.nrrd",
+    "label_path": "../annotation_volumes/allen2017_colours.csv",
+    "segmentation_folder": "../test_data/ttA_2877_NOP_segmentations",
+    "alignment_json": "../test_data/ttA_2877_NOP_horizontal_final_2017.json",
+    "nonlinear": true,
+    "colour": [0, 0, 255],
+    "points_json_path": "../outputs/test1_points.json",
+    "counts_per_label_name": "../outputs/test1_counts_per_allenID_2017.csv"
+}
\ No newline at end of file

test_data/artificial_VisuAlign.json

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