Merge pull request #10 from Neural-Systems-at-UIO/OOP
Made an object oriented main file, added reports based on objects as well as pixels and saved both to meshview files
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- .vscode/settings.json 3 additions, 0 deletions.vscode/settings.json
- PyNutil/__init__.py 1 addition, 0 deletionsPyNutil/__init__.py
- PyNutil/coordinate_extraction.py 214 additions, 176 deletionsPyNutil/coordinate_extraction.py
- PyNutil/counting_and_load.py 95 additions, 46 deletionsPyNutil/counting_and_load.py
- PyNutil/folder_of_segmentations_to_meshview.py 0 additions, 90 deletionsPyNutil/folder_of_segmentations_to_meshview.py
- PyNutil/folder_of_segmentations_to_meshview_multithreaded.py 0 additions, 62 deletionsPyNutil/folder_of_segmentations_to_meshview_multithreaded.py
- PyNutil/generate_target_slice.py 78 additions, 0 deletionsPyNutil/generate_target_slice.py
- PyNutil/main.py 305 additions, 6 deletionsPyNutil/main.py
- PyNutil/metadata/__init__.py 1 addition, 0 deletionsPyNutil/metadata/__init__.py
- PyNutil/metadata/config.json 28 additions, 0 deletionsPyNutil/metadata/config.json
- PyNutil/metadata/metadata_loader.py 20 additions, 0 deletionsPyNutil/metadata/metadata_loader.py
- PyNutil/read_and_write.py 60 additions, 50 deletionsPyNutil/read_and_write.py
- PyNutil/visualign_deformations.py 219 additions, 154 deletionsPyNutil/visualign_deformations.py
- annotation_volumes/AllenMouseBrain_Atlas_CCF_2015.label 0 additions, 1302 deletionsannotation_volumes/AllenMouseBrain_Atlas_CCF_2015.label
- annotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label 0 additions, 1342 deletionsannotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label
- annotation_volumes/WHS_Atlas_Rat_Brain_v2.label 0 additions, 95 deletionsannotation_volumes/WHS_Atlas_Rat_Brain_v2.label
- annotation_volumes/WHS_Atlas_Rat_Brain_v3.label 0 additions, 134 deletionsannotation_volumes/WHS_Atlas_Rat_Brain_v3.label
- annotation_volumes/WHS_SD_rat_atlas_v4.label 0 additions, 237 deletionsannotation_volumes/WHS_SD_rat_atlas_v4.label
- annotation_volumes/WHS_v2_colours.csv 0 additions, 82 deletionsannotation_volumes/WHS_v2_colours.csv
- annotation_volumes/WHS_v3_colours.csv 0 additions, 121 deletionsannotation_volumes/WHS_v3_colours.csv
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