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.gitlab-ci.yml
View file @ 38791430
......@@ -3,31 +3,34 @@ stages:
- test
variables:
BUILD_ENV_DOCKER_IMAGE: docker-registry.ebrains.eu/tc/ebrains-spack-build-env/base:devel
BUILD_ENV_DOCKER_IMAGE: docker-registry.ebrains.eu/ebrains-spack-build-env/base:24.12
SPACK_VERSION: v0.21.1
SPACK_PATH_GITLAB: /mnt/spack_v0.21.1
SYSTEMNAME: ebrainslab
OC_PROJECT: jupyterhub
# ===================================================================
# LAB DEPLOYMENTS
# ===================================================================
# start an OpenShift Job that will build the Spack environment
# start a k8s Job that will build the Spack environment
.deploy-build-environment:
stage: build
tags:
- docker-runner
- read-only
image: alpine:3.21.0
before_script:
- apk add kubectl
script:
# login and select project in openshift
- oc login "$OPENSHIFT_SERVER" --token="$OPENSHIFT_TOKEN"
- oc project $OC_PROJECT
# use the site-specific kubectl context
- kubectl config use-context $KUBE_CONTEXT
# create job description file
- chmod a+x create_job.sh
- ./create_job.sh $CI_PIPELINE_ID $BUILD_ENV_DOCKER_IMAGE $INSTALLATION_ROOT $SPACK_VERSION $SPACK_ENV $CI_COMMIT_BRANCH $RELEASE_NAME $LAB_KERNEL_ROOT
- sh create_job.sh $CI_PIPELINE_ID $BUILD_ENV_DOCKER_IMAGE $INSTALLATION_ROOT $SPACK_VERSION $SPACK_ENV $CI_COMMIT_BRANCH $RELEASE_NAME $LAB_KERNEL_ROOT
- cat simplejob.yml
# start the deploy job
- oc create -f simplejob.yml
- kubectl create -f simplejob.yml
# wait for job to finish to get the logs
- while true; do sleep 300; x=$(oc get pods | grep simplejob${CI_PIPELINE_ID} | awk '{ print $3}'); if [ $x != "Running" ]; then break; fi; done
- while true; do sleep 300; x=$(kubectl get pods -l job-name=simplejob${CI_PIPELINE_ID} -o jsonpath='{.items[0].status.phase}'); if [ $x != "Running" ]; then break; fi; done
# # copy logs of failed packages locally, to keep as job artifacts
# - oc rsync $(oc get pods -l job-name=simplejob${CI_PIPELINE_ID} -o name):/tmp ./ --include="*/" --include="spack/spack-stage/*/*.txt" --exclude="*"
# - mv tmp/spack/spack-stage spack_logs
......@@ -36,12 +39,10 @@ variables:
# - oc rsync $(oc get pods -l job-name=simplejob${CI_PIPELINE_ID} -o name):$LAB_KERNEL_PATH ./
# - mv .$LAB_KERNEL_PATH kernel_specs
# if spack install has failed, fail the pipeline
- oc logs jobs/simplejob${CI_PIPELINE_ID} | tee log.txt
- if [ $(cat log.txt | grep "No module available for package" | wc -l) -gt 0 ]; then exit 1; fi;
# delete the job from OpenShift as we have the logs here
- oc delete job simplejob${CI_PIPELINE_ID} || true
tags:
- shell-runner
- kubectl logs jobs/simplejob${CI_PIPELINE_ID} | tee log.txt
- if [ $(kubectl get pods -l job-name=simplejob${CI_PIPELINE_ID} -o jsonpath='{.items[0].status.containerStatuses[0].state.terminated.exitCode}') -ne 0 ]; then exit 1; fi;
# delete the job, as we have the logs here
- kubectl delete job simplejob${CI_PIPELINE_ID} || true
# artifacts:
# paths:
# - spack_logs
......@@ -66,52 +67,26 @@ variables:
LAB_KERNEL_ROOT: /srv/jupyterlab_kernels/prod
INSTALLATION_ROOT: /srv/main-spack-instance-2402
# deploy to the dev lab environment at CSCS
.deploy-dev-server-cscs:
extends: .deploy-dev-server
variables:
OPENSHIFT_SERVER: $CSCS_OPENSHIFT_DEV_SERVER
OPENSHIFT_TOKEN: $CSCS_OPENSHIFT_DEV_TOKEN
BUILD_ENV_DOCKER_IMAGE: docker-registry.ebrains.eu/tc/ebrains-spack-build-env/okd:okd_23.06
OC_PROJECT: jupyterhub-int
resource_group: shared-NFS-mount-dev-cscs
tags: # this is just to ensure that the two jobs will run on different runners
- read-write # to avoid issues with common environment variables
- shell-runner
# deploy to the prod lab environment at CSCS
.deploy-prod-server-cscs:
extends: .deploy-prod-server
variables:
OPENSHIFT_SERVER: $CSCS_OPENSHIFT_PROD_SERVER
OPENSHIFT_TOKEN: $CSCS_OPENSHIFT_PROD_TOKEN
BUILD_ENV_DOCKER_IMAGE: docker-registry.ebrains.eu/tc/ebrains-spack-build-env/okd:okd_23.06
resource_group: shared-NFS-mount-prod-cscs
tags: # this is just to ensure that the two jobs will run on different runners
- read-write # to avoid issues with common environment variables
- shell-runner
# deploy to the dev lab environment at CINECA
.deploy-dev-server-cineca:
extends: .deploy-dev-server
variables:
OPENSHIFT_SERVER: $CINECA_K8S_DEV_SERVER
OPENSHIFT_TOKEN: $CINECA_K8S_DEV_TOKEN
KUBE_CONTEXT: cineca-int
resource_group: shared-NFS-mount-dev-cineca
tags: # this is just to ensure that the two jobs will run on different runners
- read-only # to avoid issues with common environment variables
- shell-runner
# deploy to the prod lab environment at JSC
.deploy-prod-server-jsc:
extends: .deploy-prod-server
variables:
OPENSHIFT_SERVER: $JSC_K8S_PROD_SERVER
OPENSHIFT_TOKEN: $JSC_K8S_PROD_TOKEN
KUBE_CONTEXT: jsc-prod
resource_group: shared-NFS-mount-prod-jsc
tags: # this is just to ensure that the two jobs will run on different runners
- read-only # to avoid issues with common environment variables
- shell-runner
# deploy to the prod lab environment at CINECA
.deploy-prod-server-cineca:
extends: .deploy-prod-server
variables:
KUBE_CONTEXT: cineca-prod
resource_group: shared-NFS-mount-prod-cineca
# -------------------------------------------------------------------
# Release types: test, experimental and official releases
......@@ -156,47 +131,29 @@ variables:
# Lab deployment jobs
# -------------------------------------------------------------------
# deploy int release to dev environment at CSCS
deploy-int-release-dev-cscs:
extends:
- .deploy-int-release
- .deploy-dev-server-cscs
# deploy int release to dev environment at CINECA
deploy-int-release-dev-cineca:
extends:
- .deploy-int-release
- .deploy-dev-server-cineca
# deploy exp release to dev environment at CSCS
deploy-exp-release-dev-cscs:
extends:
- .deploy-exp-dev-release
- .deploy-dev-server-cscs
# deploy exp release to dev environment at CINECA
deploy-exp-release-dev-cineca:
extends:
- .deploy-exp-dev-release
- .deploy-dev-server-cineca
# deploy exp release to prod environment at CSCS
deploy-exp-release-prod-cscs:
extends:
- .deploy-exp-prod-release
- .deploy-prod-server-cscs
# deploy exp release to prod environment at JSC
deploy-exp-release-prod-jsc:
extends:
- .deploy-exp-prod-release
- .deploy-prod-server-jsc
# deploy prod release to prod environment at CSCS
deploy-prod-release-prod-cscs:
# deploy exp release to prod environment at CINECA
deploy-exp-release-prod-cineca:
extends:
- .deploy-prod-release
- .deploy-prod-server-cscs
- .deploy-exp-prod-release
- .deploy-prod-server-cineca
# deploy prod release to prod environment at JSC
deploy-prod-release-prod-jsc:
......@@ -204,6 +161,12 @@ deploy-prod-release-prod-jsc:
- .deploy-prod-release
- .deploy-prod-server-jsc
# deploy prod release to prod environment at CINECA
deploy-prod-release-prod-cineca:
extends:
- .deploy-prod-release
- .deploy-prod-server-cineca
# ===================================================================
# GITLAB RUNNER DEPLOYMENTS
# ===================================================================
......@@ -224,11 +187,7 @@ build-spack-env-on-runner:
- >
echo " view: False" >> $CI_PROJECT_DIR/site-config/$SYSTEMNAME/spack.yaml
# run installation script
- . install_spack_env.sh $SPACK_JOBS $CI_PROJECT_DIR $SPACK_VERSION $CI_PROJECT_DIR $SPACK_DEV_ENV $SPACK_PATH_GITLAB
# re-activate envionment and run tests
- spack env activate $SPACK_DEV_ENV
# TODO: run all tests when test dependency issue is fixed
# - spack test run -x wf-brainscales2-demos wf-multi-area-model
- bash install_spack_env.sh $SPACK_JOBS $CI_PROJECT_DIR $SPACK_VERSION $CI_PROJECT_DIR $SPACK_DEV_ENV $SPACK_PATH_GITLAB
after_script:
- mkdir -p $CI_PROJECT_DIR/spack_logs/installed $CI_PROJECT_DIR/spack_logs/not_installed
# for succesfully installed packages: keep the spack logs for any package modified during this CI job
......@@ -263,10 +222,10 @@ sync-gitlab-spack-instance:
# get latest state of EBRAINS repo
- rm -rf $SPACK_REPO_PATH && cp -r $CI_PROJECT_DIR $SPACK_REPO_PATH
# run installation script
- . install_spack_env.sh $SPACK_JOBS $SPACK_PATH_GITLAB $SPACK_VERSION $SPACK_REPO_PATH $SPACK_NFS_ENV
- bash install_spack_env.sh $SPACK_JOBS $SPACK_PATH_GITLAB $SPACK_VERSION $SPACK_REPO_PATH $SPACK_NFS_ENV
# create kernel spec, so that the environment can be used in gitlab CI jobs
- RELEASE_NAME=$(case $CI_COMMIT_BRANCH in experimental_rel) echo ebrains-experimental;; ebrains*) echo ${CI_COMMIT_BRANCH:0:10}.${CI_COMMIT_BRANCH:11};; *) echo $CI_COMMIT_BRANCH;; esac);
- . create_JupyterLab_kernel.sh $SPACK_PATH_GITLAB $SPACK_NFS_ENV $RELEASE_NAME /mnt/ebrains_env
- bash create_JupyterLab_kernel.sh $SPACK_PATH_GITLAB $SPACK_NFS_ENV $RELEASE_NAME /mnt/ebrains_env
after_script:
- mkdir -p $CI_PROJECT_DIR/spack_logs/installed $CI_PROJECT_DIR/spack_logs/not_installed
# for succesfully installed packages: keep the spack logs for any package modified during this CI job
......
README.md
View file @ 38791430
......@@ -40,7 +40,7 @@ git clone --branch {branch-name} https://gitlab.ebrains.eu/ri/tech-hub/platform/
Clone Spack. We currently use version v0.21.1:
```
git clone --depth 1 -c advice.detachedHead=false -c feature.manyFiles=true --branch v0.20.0 https://github.com/spack/spack
git clone --depth 1 -c advice.detachedHead=false -c feature.manyFiles=true --branch v0.21.1 https://github.com/spack/spack
```
Activate Spack:
......@@ -53,11 +53,6 @@ Add the project repository to your Spack environment:
spack repo add ebrains-spack-builds
```
Create the environment:
```
spack env create -d ebrains-spack-builds/
```
Define your site-specific configurations:
```
export SYSTEMNAME=<your-system-name>
......
create_JupyterLab_kernel.sh
View file @ 38791430
......@@ -7,6 +7,8 @@
# loaded by all users.
# ===========================================================================================================
set -euo pipefail
INSTALLATION_ROOT=$1
EBRAINS_SPACK_ENV=$2
RELEASE_NAME=$3
......
create_job.sh
View file @ 38791430
......@@ -58,21 +58,19 @@ spec:
# reset spack repository dir by cloning the selected version
rm -rf \$EBRAINS_REPO_PATH
git clone https://gitlab.ebrains.eu/technical-coordination/project-internal/devops/platform/ebrains-spack-builds.git --branch \$BRANCH \$EBRAINS_REPO_PATH
git clone ${CI_PROJECT_URL} --branch \$BRANCH \$EBRAINS_REPO_PATH
# run installation script
. \$EBRAINS_REPO_PATH/install_spack_env.sh \$SPACK_JOBS \$INSTALLATION_ROOT \$SPACK_VERSION \$EBRAINS_REPO_PATH \$EBRAINS_SPACK_ENV
bash \$EBRAINS_REPO_PATH/install_spack_env.sh \$SPACK_JOBS \$INSTALLATION_ROOT \$SPACK_VERSION \$EBRAINS_REPO_PATH \$EBRAINS_SPACK_ENV
if [ \$? -eq 0 ]
then
# build process succeeded - create or update kernel on the NFS based on the current spack environment
chmod +x \$EBRAINS_REPO_PATH/create_JupyterLab_kernel.sh
\$EBRAINS_REPO_PATH/create_JupyterLab_kernel.sh \$INSTALLATION_ROOT \$EBRAINS_SPACK_ENV \$RELEASE_NAME \$LAB_KERNEL_ROOT
exit 0
bash \$EBRAINS_REPO_PATH/create_JupyterLab_kernel.sh \$INSTALLATION_ROOT \$EBRAINS_SPACK_ENV \$RELEASE_NAME \$LAB_KERNEL_ROOT && exit 0
else
# build process failed - keep spack build logs and fail the pipeline
cp -r /tmp/spack/spack-stage/* \$SPACK_BUILD_LOGS
exit
cp -r /tmp/spack/spack-stage/* \$BUILD_LOGS_DIR
exit 1
fi
env:
- name: SYSTEMNAME
......
install_spack_env.sh
View file @ 38791430
......@@ -7,6 +7,8 @@
# (if the specified spack instance doesn't exist, it also creates it)
# =========================================================================================================================================
set -eo pipefail
SPACK_JOBS=$1 # number of jobs
INSTALLATION_ROOT=$2 # where to set up the installation
SPACK_VERSION=$3 # which spack version to use
......@@ -15,7 +17,7 @@ EBRAINS_SPACK_ENV=$5 # name of EBRAINS Spack environment to be created/updated
UPSTREAM_INSTANCE=$6 # path to Spack instance to use as upstream (optional)
SPACK_REPO=https://gitlab.ebrains.eu/ri/tech-hub/platform/esd/spack.git
SPACK_VERSION_EBRAINS=${SPACK_VERSION}_ebrains24.04
SPACK_VERSION_EBRAINS=${SPACK_VERSION}_ebrains24.11
# specify location of .spack dir (by default in ~)
# this is where cache and configuration settings are stored
......
packages/build-brainscales/package.py
View file @ 38791430
......@@ -15,6 +15,20 @@ import spack.build_environment
class BuildBrainscales(WafPackage):
"""Common stuff for BrainScaleS packages..."""
version(
"9.0-a8",
git="https://github.com/electronicvisions/releases-ebrains",
tag="ebrains-9.0-a8",
commit="44323be431da4b4b43890815f453c27207dee0b2",
submodules=True,
)
version(
"9.0-a7",
git="https://github.com/electronicvisions/releases-ebrains",
tag="ebrains-9.0-a7",
commit="2337adc6a33f907900d2b8be5d9f0b15872a200a",
submodules=True,
)
version(
"9.0-a6",
git="https://github.com/electronicvisions/releases-ebrains",
......@@ -38,6 +52,8 @@ class BuildBrainscales(WafPackage):
)
# common dependencies of BuildBrainscales-derived packages
depends_on('oppulance@9.0-a8', when='@9.0-a8', type=('build', 'link', 'run', 'test'))
depends_on('oppulance@9.0-a7', when='@9.0-a7', type=('build', 'link', 'run', 'test'))
depends_on('oppulance@9.0-a6', when='@9.0-a6', type=('build', 'link', 'run', 'test'))
depends_on('oppulance@9.0-a5', when='@9.0-a5', type=('build', 'link', 'run', 'test'))
depends_on('oppulance@9.0-a4', when='@9.0-a4', type=('build', 'link', 'run', 'test'))
......
packages/log4cxx/package.py
View file @ 38791430
......@@ -10,16 +10,16 @@ class Log4cxx(CMakePackage):
"""A C++ port of Log4j"""
homepage = "https://logging.apache.org/log4cxx/latest_stable/"
url = "https://dlcdn.apache.org/logging/log4cxx/0.12.0/apache-log4cxx-0.12.0.tar.gz"
url = "https://github.com/apache/logging-log4cxx/archive/refs/tags/rel/v1.2.0.tar.gz"
maintainers("nicmcd")
# begin EBRAINS (added): bring upstream (ref. spack@0.21.2)
version("1.2.0", sha256="09f4748aa5675ef5c0770bedbf5e00488668933c5a935a43ac5b85be2436c48a")
version("1.1.0", sha256="1fc7d82697534184bc0f757348d969d24852b948f63d6b17283fd1ee29c2c28a")
version("1.2.0", sha256="3e0af426011718c634194200cdd79b49ec13c322697bdcddef3d8b2ac9efd7b6")
version("1.1.0", sha256="feb425ce35a391cf0927356bebb7da53f96c8a7aaf634aaf740e011203c732bb")
# end EBRAINS
version("0.12.1", sha256="7bea5cb477f0e31c838f0e1f4f498cc3b30c2eae74703ddda923e7e8c2268d22")
version("0.12.0", sha256="bd5b5009ca914c8fa7944b92ea6b4ca6fb7d146f65d526f21bf8b3c6a0520e44")
version("0.12.1", sha256="567a4200c5b005a816c401e798d98294782950c7750eb3e285e851b970c8beed")
version("0.12.0", sha256="31730a17b8ff3f416256755b7aa6d7e95b167c670eb469eb9ff99aa006376e79")
variant("cxxstd", default="17", description="C++ standard", values=("11", "17"), multi=False)
# begin EBRAINS (added)
......
packages/oppulance/package.py
View file @ 38791430
......@@ -21,6 +21,20 @@ class Oppulance(Package):
depends_on('wget')
depends_on('gmp')
version(
"9.0-a8",
git="https://github.com/electronicvisions/releases-ebrains",
tag="ebrains-9.0-a8",
commit="44323be431da4b4b43890815f453c27207dee0b2",
submodules=True,
)
version(
"9.0-a7",
git="https://github.com/electronicvisions/releases-ebrains",
tag="ebrains-9.0-a7",
commit="2337adc6a33f907900d2b8be5d9f0b15872a200a",
submodules=True,
)
version(
"9.0-a6",
git="https://github.com/electronicvisions/releases-ebrains",
......
packages/py-nestml/package.py
View file @ 38791430
......@@ -13,11 +13,12 @@ class PyNestml(PythonPackage):
"""
homepage = 'https://nestml.readthedocs.org/'
url = 'https://pypi.org/packages/py3/N/NESTML/NESTML-7.0.2-py3-none-any.whl'
url = 'https://pypi.org/packages/py3/N/NESTML/NESTML-8.0.0-py3-none-any.whl'
git = 'https://github.com/nest/nestml/'
maintainers = ['clinssen', 'pnbabu']
version('8.0.0', sha256='bb2182fadd5f3ff7fa538e7f9865bafefb8be67938c83028174491768e88ef09', expand=False)
version('7.0.2', sha256='3611239ff8436bf1c74b878562564007285c6da5df0317c6cd52f65e6bcd3f8b', expand=False)
version('7.0.1', sha256='38392bdd06c5be5af65050153f34fb78dee6032158b268b83599bd70aab5c030', expand=False)
version('7.0.0', sha256='4e271048b4a9ad2c161dda98d3ee25e143537649a264d521deb0ff5543020d73', expand=False)
......
packages/py-nnmt/package.py 0 → 100644
View file @ 38791430
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyNnmt(PythonPackage):
"""NNMT is an open-source, community centered Python package for collecting
reusable implementations of analytical methods for neuronal network model analysis
based on mean-field theory."""
homepage = "https://nnmt.readthedocs.io/en/latest/index.html"
pypi = "nnmt/nnmt-1.3.0.tar.gz"
maintainers = ["rshimoura", "terhorstd"]
version("1.3.0", sha256="0cb4f7c58e08520e383506b5b15fb0a9552801adc03fd1006b9e3dd17b1b636d")
depends_on("py-setuptools@23.1.0:", type="build")
depends_on("py-numpy@1.8:", type=("build", "run"))
depends_on("py-scipy@0.14:", type=("build", "run"))
depends_on("py-cython@0.20:", type=("build", "run"))
depends_on("py-h5py@2.5:", type=("build", "run"))
depends_on("py-matplotlib@2.0:", type=("build", "run"))
depends_on("py-pint", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
depends_on("py-requests", type=("build", "run"))
depends_on("py-mpmath", type=("build", "run"))
depends_on("py-decorator", type=("build", "run"))
depends_on("py-pytest@5.4:", type=("build", "run"))
depends_on("py-pytest-mock@3.1:", type=("build", "run"))
depends_on("python@3:", type=("build", "run"))
packages/py-spalloc/package.py
View file @ 38791430
......@@ -13,8 +13,17 @@ class PySpalloc(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/spalloc"
pypi = "spalloc/spalloc-1!7.0.0.tar.gz"
def url_for_version(self, version):
url = "https://pypi.org/packages/source/s/spalloc/spalloc-1!{}.tar.gz"
return url.format(version)
version('7.3.0', sha256='5664546187a57c87743c8bf1db812a2ab1c14db15fb0f44ee64f5f72d1cdedac')
version('7.0.0', sha256='e141a0e661efd6fd634f3793752d8d6deef56ee37a21fa8e3d7208f4edd86f51')
depends_on("python@3.7:", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnutilities@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnutilities@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-jsonschema", type=("build", "run"))
depends_on("py-spinnutilities@7.0.0", type=("build", "run"))
packages/py-spinnaker-pacman/package.py
View file @ 38791430
......@@ -13,9 +13,21 @@ class PySpinnakerPacman(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/PACMAN"
pypi = "SpiNNaker_PACMAN/SpiNNaker_PACMAN-1!7.0.0.tar.gz"
def url_for_version(self, version):
name = "spinnaker_pacman" if version >= Version("7.2.0") else "SpiNNaker_PACMAN"
url = "https://pypi.org/packages/source/s/SpiNNaker_PACMAN/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="ef597e14aac9877c676181082e11e77ea3d4b0dfb5977b0d3ce78020229fb055")
version("7.0.0", sha256="d9e7e620d02fda88f57a8cf157cc9421b5606d453230847f3d35985eae4c074d")
depends_on("python@3.7:", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnutilities@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnmachine@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnutilities@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-spinnmachine@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-jsonschema", type=("build", "run"))
depends_on("py-spinnutilities@7.0.0", type=("build", "run"))
depends_on("py-spinnmachine@7.0.0", type=("build", "run"))
packages/py-spinnfrontendcommon/package.py
View file @ 38791430
......@@ -6,8 +6,11 @@
from spack.package import *
_JAR_URL = "https://github.com/SpiNNakerManchester/JavaSpiNNaker/releases/download/7.0.0/spinnaker-exe.jar"
_JAR_SHA256 = "2d909c7fb3aa15886acf26febb1bd48e25db0c347a231944aa6a5f86107bb55b"
_JAR_URL_7_3_0 = "https://github.com/SpiNNakerManchester/JavaSpiNNaker/releases/download/7.3.0/spinnaker-exe.jar"
_JAR_SHA256_7_3_0 = "8fea399e835d053eb9b9b8b6f4752475d19cc3995389ca544f3ad1758007edbf"
_JAR_URL_7_0_0 = "https://github.com/SpiNNakerManchester/JavaSpiNNaker/releases/download/7.0.0/spinnaker-exe.jar"
_JAR_SHA256_7_0_0 = "2d909c7fb3aa15886acf26febb1bd48e25db0c347a231944aa6a5f86107bb55b"
class PySpinnfrontendcommon(PythonPackage):
"""This package provides utilities for specifying binary data
......@@ -16,18 +19,32 @@ class PySpinnfrontendcommon(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/SpiNNFrontEndCommon"
pypi = "SpiNNFrontEndCommon/SpiNNFrontEndCommon-1!7.0.0.tar.gz"
def url_for_version(self, version):
name = "spinnfrontendcommon" if version >= Version("7.2.0") else "SpiNNFrontEndCommon"
url = "https://pypi.org/packages/source/s/SpiNNFrontEndCommon/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="c3aea0160525c4f08bc74244f219a9664a06aa70876cfb68944c7d6378daf161")
version("7.0.0", sha256="07539734ed0105472d06d655bbd92e149ef44c77c388fcca28857558faa6dd10")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-spinnman@7.0.0", type=("build", "run"))
depends_on("py-spinnaker-pacman@7.0.0", type=("build", "run"))
depends_on("py-spalloc@7.0.0", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnman@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnaker-pacman@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spalloc@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnman@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-spinnaker-pacman@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-spalloc@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-scipy@0.16.0:", type=("build", "run"))
depends_on("py-ebrains-drive@0.5.1:", type=("build", "run"))
depends_on("java@11:")
resource(name="spinnaker-exe.jar", url=_JAR_URL, checksum=_JAR_SHA256, expand=False, placement="resource_root/JavaSpiNNaker/SpiNNaker-front-end/target")
resource(name="spinnaker-exe.jar", url=_JAR_URL_7_0_0, checksum=_JAR_SHA256_7_0_0, expand=False, placement="resource_root/JavaSpiNNaker/SpiNNaker-front-end/target", when="@7.0.0")
resource(name="spinnaker-exe.jar", url=_JAR_URL_7_3_0, checksum=_JAR_SHA256_7_3_0, expand=False, placement="resource_root/JavaSpiNNaker/SpiNNaker-front-end/target", when="@7.3.0")
def install(self, spec, prefix):
super(PySpinnfrontendcommon, self).install(spec, prefix)
......
packages/py-spinnmachine/package.py
View file @ 38791430
......@@ -13,7 +13,16 @@ class PySpinnmachine(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/SpiNNMachine"
pypi = "SpiNNMachine/SpiNNMachine-1!7.0.0.tar.gz"
def url_for_version(self, version):
name = "spinnmachine" if version >= Version("7.2.0") else "SpiNNMachine"
url = "https://pypi.org/packages/source/s/SpiNNMachine/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="7c23def7deac54d56e23f4679c2317ddd053e6f6632c81ddf497fe021f37960c")
version("7.0.0", sha256="5da374fd9208287799fbc324136fe5954dd1b370792ea81ea10d4537643272ad")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-spinnutilities@7.0.0", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnutilities@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnutilities@7.0.0", type=("build", "run"), when="@7.0.0")
packages/py-spinnman/package.py
View file @ 38791430
......@@ -13,8 +13,18 @@ class PySpinnman(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/SpiNNMan"
pypi = "SpiNNMan/SpiNNMan-1!7.0.0.tar.gz"
def url_for_version(self, version):
name = "spinnman" if version >= Version("7.2.0") else "SpiNNMan"
url = "https://pypi.org/packages/source/s/SpiNNMan/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="8b4924ee31cae35845164da8d2da69391d306246772c706fdcd935e4ce8535db")
version("7.0.0", sha256="61bc8934e4ad6798b48c02ff6c8a3ef5c8e080a5ee2f4b88fc9cd587ed1b1ae6")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-spinnmachine@7.0.0", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnmachine@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnmachine@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-websocket-client", type=("build", "run"))
packages/py-spinnutilities/package.py
View file @ 38791430
......@@ -14,9 +14,17 @@ class PySpinnutilities(PythonPackage):
homepage = "https://github.com/SpiNNakerManchester/SpiNNUtils"
pypi = "SpiNNUtilities/SpiNNUtilities-1!7.0.0.tar.gz"
def url_for_version(self, version):
name = "spinnutilities" if version >= Version("7.2.0") else "SpiNNUtilities"
url = "https://pypi.org/packages/source/s/SpiNNUtilities/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="5343004fd2aeec0124267e91c2649356b20bf8f2a5d33c9d7cd5ea6cce7dd86b")
version("7.0.0", sha256="662855395ec367008735047a66a7ca75d1e5070e309ca3aa6ba3a843fb722841")
depends_on("python@3.7:", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-appdirs", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
......
packages/py-spynnaker/package.py
View file @ 38791430
......@@ -15,10 +15,18 @@ class PySpynnaker(PythonPackage):
maintainers = ["rowley"]
def url_for_version(self, version):
name = "spynnaker" if version >= Version("7.2.0") else "sPyNNaker"
url = "https://pypi.org/packages/source/s/sPyNNaker/{}-1!{}.tar.gz"
return url.format(name, version)
version("7.3.0", sha256="f052a50b8a31b526f0249b7aa1f7fe77c2f34fc35838600bef17c43e9d3bf9a9")
version("7.0.0", sha256="caeaa624e3fdbca3b938c9be7ea4c78a51a037e659389fb01952822f069664db")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-spinnfrontendcommon@7.0.0", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"), when="@7.3.0:")
depends_on("python@3.7:", type=("build", "run"), when="@7.0.0:")
depends_on("py-spinnfrontendcommon@7.3.0", type=("build", "run"), when="@7.3.0")
depends_on("py-spinnfrontendcommon@7.0.0", type=("build", "run"), when="@7.0.0")
depends_on("py-matplotlib", type=("build", "run"))
depends_on("py-quantities", type=("build", "run"))
depends_on("py-pynn", type=("build", "run"))
......
packages/py-tvb-widgets/package.py
View file @ 38791430
......@@ -47,8 +47,7 @@ class PyTvbWidgets(PythonPackage):
depends_on('py-traitlets@5.7.1:', type=('build', 'run'))
depends_on('py-toml', type=('build', 'run'))
depends_on('py-bokeh', type=('build', 'run'))
depends_on('vtk@=9.2.6', type=('build', 'run'))
depends_on('vtk@9:9.3', type=('build', 'run'))
depends_on('py-pytest', type='test')
depends_on('py-pytest-mock', type='test')
......
packages/wf-brainscales2-demos/package.py
View file @ 38791430
......@@ -16,6 +16,8 @@ class WfBrainscales2Demos(Package):
maintainers = ["emuller", "muffgaga"]
# ECM: we probably should build the ipynb file in this package
version("9.0-a8", tag="jupyter-notebooks-9.0-a8")
version("9.0-a7", tag="jupyter-notebooks-9.0-a7")
version("9.0-a6", tag="jupyter-notebooks-9.0-a6")
version("9.0-a5", tag="jupyter-notebooks-9.0-a5")
version("9.0-a4", tag="jupyter-notebooks-9.0-a4")
......
packages/wf-human-multi-area-model/package.py 0 → 100644
View file @ 38791430
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class WfHumanMultiAreaModel(Package):
"""Meta-package to collect all dependencies of the Human Multi-Area-Model."""
git = "https://github.com/INM-6/human-multi-area-model"
maintainer = ["rshimoura", "terhorstd"]
version("2.0.1", tag="v2.0.1")
version("master", branch="master")
depends_on("nest@3.8:", type=("run", "test"))
depends_on("py-joblib@1.2.0:", type=("run", "test"))
depends_on("py-xlrd@2.0.1:", type=("run", "test"))
depends_on("py-matplotlib@3.7.3:", type=("run", "test"))
depends_on("py-pyyaml@6.0:", type=("run", "test"))
depends_on("py-numpy@1.23.5:", type=("run", "test"))
depends_on("py-seaborn@0.12.2:", type=("run", "test"))
depends_on("python@3.8:", type=("run", "test"))
depends_on("py-pandas@2.0.3:", type=("run", "test"))
depends_on("py-scipy@1.10.1:", type=("run", "test"))
depends_on("py-nnmt@1.3.0:", type=("run", "test"))
depends_on("py-dicthash@0.0.1:", type=("run", "test"))
depends_on("py-networkx@3.1:", type=("run", "test"))
depends_on("py-notebook@6.5.4:", type=("run", "test"))
depends_on("py-future@0.18.2:", type=("run", "test"))
def install(self, spec, prefix):
install_tree(".", join_path(prefix, "notebooks"))
def _nbconvert(self, nb, nb_out):
jupyter = Executable("jupyter")
args = [
"nbconvert",
"--ExecutePreprocessor.kernel_name=python3",
"--execute",
"--to",
"notebook",
nb,
"--output",
nb_out
]
try:
# execute notebook and save
jupyter(*args)
except Exception as e:
# if the above fails, re-run notebook to produce output with error
jupyter(*(args+["--allow-errors"]))
raise
def _run_notebooks(self, output_dir):
mkdirp(output_dir)
self._nbconvert(join_path(self.prefix, "notebooks", "humam_tutorial.ipynb"), join_path(output_dir, "humam_tutorial.ipynb"))
@run_after("install")
@on_package_attributes(run_tests=True)
def installcheck(self):
self._run_notebooks(join_path(self.stage.path, ".install_time_tests"))
copy_tree(join_path(self.stage.path, ".install_time_tests"), join_path(self.prefix, '.build'))
def test_notebook(self):
self._run_notebooks(join_path(self.test_suite.stage, self.spec.format("out-{name}-{version}-{hash:7}")))