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  1. Oct 06, 2021
  2. Oct 05, 2021
  3. Aug 19, 2021
  4. Aug 17, 2021
  5. Jul 23, 2021
  6. Jul 05, 2021
  7. Jun 24, 2021
    • Nora Abi Akar's avatar
      Python unit test clean-up (#1595) · 5661a74b
      Nora Abi Akar authored
      * Remove test_simulator.py.
      * Add missing python unit test file and fix errors.
      * Run python unit tests in verbose mode to display which were skipped.
      5661a74b
  8. Jun 23, 2021
  9. Jun 22, 2021
  10. Jun 16, 2021
  11. May 10, 2021
  12. Apr 29, 2021
  13. Apr 01, 2021
  14. Mar 17, 2021
    • Brent Huisman's avatar
      Port of Brunel example (#1404) · c326ab3b
      Brent Huisman authored
      * Add Python version of brunel.cpp example.
      * Enforce consistency in units: both C++ and Python APIs use unit `kHz` for all frequencies.
      * Align Python version `poisson_schedule` signature with C++ equivalent.
      * Update unit tests to suit API changes.
      * Update documentation to suit, along with minor additions related to networks and interconnectivity.
      * Add `brunel.py` to `basic.yml` tests
      c326ab3b
  15. Mar 15, 2021
    • thorstenhater's avatar
      Run C++ examples in CI (#1432) · e427c8e7
      thorstenhater authored
      - Add _running_ C++ examples to standard CI runs (compiling has been in since the start).
      - Fix `bench.cpp` to set return value to 1 if exceptions are caught.
      e427c8e7
  16. Mar 05, 2021
  17. Mar 01, 2021
  18. Feb 18, 2021
    • Brent Huisman's avatar
      Tutorials: ring network (#1313) · 506ff916
      Brent Huisman authored
      * Tutorial ring network added. A few typos fixed, crosslinks fixed.
      * MPI tutorial added.
      * Improved SVG generation, added separate label scaling, increased default label size.
      * Bugfix: didnt generate cable region in gen-labels.py used in `concepts/morphology.rst`.
      * Termified Interconnectivity page.
      * Termified probe nomenclature page. Will be moved in [this PR](https://github.com/arbor-sim/arbor/issues/1353) from python/simulation to concepts/probes_samplers.
      506ff916
  19. Feb 17, 2021
  20. Feb 15, 2021
  21. Feb 12, 2021
  22. Feb 11, 2021
  23. Feb 10, 2021
  24. Feb 05, 2021
  25. Jan 28, 2021
  26. Jan 06, 2021
  27. Jan 05, 2021
    • Benjamin Cumming's avatar
      Remove dependence of docs on the Python module (#1293) · d326f2ea
      Benjamin Cumming authored
      Revert a change introduced in #1282 that required the python module for arbor to build the documentation.
      
      This breaks the readthedocs build, where arbor is not available.
      
      * Remove arbor dependence from `doc/conf.py`, reverting to the original "out of core" approach
      * Fix other recently introduced issues that lead to CMake errors when configuring the documentation
        when the Python target is not configured.
        * The CMake variable `PYTHON_EXECUTABLE` wasn't set, but was required to make calls to the
           Python interpreter.
        * Instead of relying on pybind11 to find Python, explicitly detect it using `find_package(Python3 ...)`
        * Make Python3 a hard requirement when building the Python wrapper
        * And a soft requirement otherwise, that will fail only when the docs are built.
      d326f2ea
  28. Dec 18, 2020
    • Nora Abi Akar's avatar
      Docs: Python examples (#1279) · 6ebfb3db
      Nora Abi Akar authored
      * Add 2 new examples to `python/examples` and their corresponding tutorials in the docs. 
          1. `single_cell_detailed.py` : a slightly more complex example using `single_cell_model`
          2. `single_cell_detailed_recipe.py`: equivalent to `single_cell_detailed.py` but using a recipe. 
      * Change `load_swc`-> `load_swc_arbor` for consistency.
      * Run Sphinx with specified PYTHON_EXECUTABLE.
      * Set PYTHONPATH env var in doc/CMakeLists.txt, such that it propagates correctly, including locally.
      * Build pyarb BEFORE html such that docs build can import arbor in Github Actions script.
      6ebfb3db
  29. Dec 15, 2020
  30. Aug 10, 2020