- Jul 12, 2016
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Sam Yates authored
further style fixes in point
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- Jul 08, 2016
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Benjamin Cumming authored
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Sam Yates authored
fix cmake to find TBB installed from source
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Benjamin Cumming authored
there was a problem with the FindTBB script for cmake where it cmake was not looking in paths specified by the environment variable LIBRARY_PATH, which meant that it was not finding the TBB library files when TBB had been installed from source and configured with tbbvars.sh
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- Jul 07, 2016
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Benjamin Cumming authored
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Ben Cumming authored
Address gcc 6.1 warnings
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Benjamin Cumming authored
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Sam Yates authored
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Sam Yates authored
add missing cmath header
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Benjamin Cumming authored
GCC 6.1 was unable to find cmath in src/point.hpp
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Ben Cumming authored
Feature/refactor tests directory
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Wouter Klijn authored
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Wouter Klijn authored
Adapt sources to include test_unit.hpp Add empty CMakeLists.txt to all test type directories
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Sam Yates authored
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Wouter Klijn authored
Gtest is currently copy twice!
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- Jul 06, 2016
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Ben Cumming authored
Fix optional<X&> assignment.
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Sam Yates authored
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Sam Yates authored
* Correct implementation of operator=(). * Unit test for optional reference assignment.
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Sam Yates authored
Modifications to util::optional for KNL compilation
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Benjamin Cumming authored
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Benjamin Cumming authored
Turn off warning about unused template parameter, when the parameter is used for SFINAE tests inside the template parameter list in the json library.
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Benjamin Cumming authored
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Benjamin Cumming authored
The Intel compiler was unable to compile the `util::optional` code, and also created some warnings in the unit tests for optional * rephrase `enable_if` template argument to use `::value` explicitly to work around Intel compiler bug. * move helper types out of anonymous namespaces in the optional unit tests * fix warnings about unused member functions * remove some white space in optional code
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- Jul 05, 2016
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Sam Yates authored
rename cl_options.check -> check_and_normalize
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Benjamin Cumming authored
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Ben Cumming authored
Feature/debug trace
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Sam Yates authored
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Sam Yates authored
* Add `multithreaded()` constexpr function in threading namespace. * Replace `WITH_TBB`-guarded code with multithreadedness- checking code.
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Sam Yates authored
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Sam Yates authored
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Sam Yates authored
improved spike chain generation in minapp
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Benjamin Cumming authored
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Benjamin Cumming authored
- improve robustness of time step and time integration interval selection - changes of the type `if (!id)` to `if (id==0)`. - fix bug selecting source cell gid when generating network connections - make all-to-all network a user-specified option - updated README - fix bug where an initial spike was not generated for the first cell on a communicator when the cell gid was a multiple of 20
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Sam Yates authored
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Sam Yates authored
Defines a TRACE(...) macro that, when enabled at compile time with -DWITH_TRACE, prints to std::cerr the location in the source, a time stamp, and the values of any variables given to the macro. Uses a mutex to protect against simultaneous writes to std::cerr when TBB is enabled; it is not optimized for speed.
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- Jul 04, 2016
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Benjamin Cumming authored
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Benjamin Cumming authored
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Benjamin Cumming authored
Fixed small conflict and fixed compiler warnings about signed-unsigned comparison when compiling in debug mode. Conflicts: src/fvm_cell.hpp
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- Jul 03, 2016
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Ben Cumming authored
Feature/swc parser whitespace
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Vasileios Karakasis authored
Whitespace-only lines are now treated correctly in SWC file parser. This automatically leads to a consistent and nice handling of old mac-style eol; they are just another whitespace (not newline). Refined the test cases a bit. Added support for mapping swc record types to nest::mc::segmentKind. This required the adjustment in some tests + the ball_and_stick file, since the dendrite type of swc record is type '3'. Before, everything except soma was added (hardcoded) as a dendrite. An swc_parse_error will be thrown in case of an impossible mapping. Also, no check is performed for inconsistencies of SWC record types along a branch; the type of the branch is assumed to be the type of the first record (compartment) in the branch. Finally, adapted to the coding style.
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