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Unverified Commit 135e91ac authored by Sam Yates's avatar Sam Yates Committed by GitHub
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Merge pull request #1123 from halfflat/feature/stitch-morphology

New PR post master rollback; squashed and rebased, but reprises #1111.

* Add (forward) ordered forest implementation, tests.
* Add `segment` region expression; to ease implementation, `msegment` now also knows its own id.
* Add `stitch_builder` and `stitched_morphology`. A stitch corresponds to a labelled, linearly-interpolated segment which can be attached at any point along a parent stitch. A `stitched_morphology` takes a `stitch_builder` object and constructs a segment tree and morphology, and provides a dictionary of stitch labels to segment indices and region expressions.
* Add `import` method for `label_dict`, so that the label dictionary returned by `stitched_morphology` can be merged with an existing dictionary.
* Add section on stitch builder etc. to cable cell docs.
* Update cable cell docs to remove out of date info and to provide some context.
* Describe ordered forest datastructure and interface in a long comment at the...
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