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  • Sam Yates's avatar
    Complex compartments · e7a8fb6f
    Sam Yates authored
    * Use divided compartments to determine FVM coefficients.
    * Pick correct control volume in FVM from sgement position (avoids
      off-by-half error.)
    * Add colour override functionality to tsplot: `--colour` option.
    * Add const accessor for cell soma.
    * Source formatting, comments in `math.hpp`
    * Fix `range_view`: was using incorrectly named type trait.
    * Add unit test for `range_view`.
    * Allow points of discontinuity to be omitted from L-infinity norm
      calculations.
    * Add `-d, --min-dt` option to `validate.exe` to control time
      step in validation convergence tests.
    * Add validation test: confirm divided compartment policy does
      not effect results on simple frustrum dendrites.
    * Change default max compartments on validation tests to 100
      (ad hoc observed convergence limit at dt circa 0.001 ms;
      finder spatial division would required much finer dt.)
    * Make NEURON validation data generation scripts use CVODE by
      default, and with `secondorder=2` when non-zero `dt` is given.
    e7a8fb6f