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Commit e7a8fb6f authored by Sam Yates's avatar Sam Yates Committed by Sam Yates
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Complex compartments

* Use divided compartments to determine FVM coefficients.
* Pick correct control volume in FVM from sgement position (avoids
  off-by-half error.)
* Add colour override functionality to tsplot: `--colour` option.
* Add const accessor for cell soma.
* Source formatting, comments in `math.hpp`
* Fix `range_view`: was using incorrectly named type trait.
* Add unit test for `range_view`.
* Allow points of discontinuity to be omitted from L-infinity norm
  calculations.
* Add `-d, --min-dt` option to `validate.exe` to control time
  step in validation convergence tests.
* Add validation test: confirm divided compartment policy does
  not effect results on simple frustrum dendrites.
* Change default max compartments on validation tests to 100
  (ad hoc observed convergence limit at dt circa 0.001 ms;
  finder spatial division would required much finer dt.)
* Make NEURON validation data generation scripts use CVODE by
  default, and with `secondorder=2` when non-zero `dt` is given.
parent a03af27d
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