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Commit 82cc6718 authored by Maximilian Schmidt's avatar Maximilian Schmidt
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Add note on SLN fit

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1 merge request!1Add all necessary files for the multi-area model
......@@ -38,9 +38,9 @@ To start using the framework, the user has to define a few environment variables
in a new file called `config.py`. The file `config_template.py` lists the required
environment variables that need to specified by the user.
Furthermore, please add the path to the `multiarea_model` subfolder to your PYTHONPATH:
Furthermore, please add the path to the repository to your PYTHONPATH:
`export PYTHONPATH=/path/to/repository/multiarea_model/:$PYTHONPATH`.
`export PYTHONPATH=/path/to/repository/:$PYTHONPATH`.
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......@@ -185,7 +185,7 @@ In addition, reproducing the figures of [1] requires networkx, python-igraph and
In addition, Figure 7 of [1] requires installing the `infomap` package to perform the map equation clustering. See <http://www.mapequation.org/code.html> for all necessary information.
The SLN fit in `multiarea_model/data_multiarea/VisualCortex_Data.py` and `figures/Schmidt2018/Fig5_cc_laminar_pattern.py` requires an installation of R and the R library `aod` (<http://cran.r-project.org/package=aod>). Without R installation, both scripts will directly use the resulting values of the fit (see Fig. 5 of [1]).
The SLN fit in `multiarea_model/data_multiarea/VisualCortex_Data.py` and `figures/Schmidt2018/Fig5_cc_laminar_pattern.py` is currently not possible because of copyright issues.
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