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IAS-6
multi-area-model
Commits
760255a9
Commit
760255a9
authored
Dec 3, 2020
by
Alexander van Meegen
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Fix sim label access
parent
82d867fe
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1 merge request
!23
Fix issues raised by golosio
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figures/Schmidt2018_dyn/Snakefile
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760255a9
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@@ -26,7 +26,7 @@ ORIGINAL_SIM_LABELS = {'all': ['533d73357fbe99f6178029e6054b571b485f40f6',
'Fig2': ['533d73357fbe99f6178029e6054b571b485f40f6',
'0adda4a542c3d5d43aebf7c30d876b6c5fd1d63e',
'33fb5955558ba8bb15a3fdce49dfd914682ef3ea'],
'Fig3': '33fb5955558ba8bb15a3fdce49dfd914682ef3ea',
'Fig3':
[
'33fb5955558ba8bb15a3fdce49dfd914682ef3ea'
]
,
'Fig4': ['33fb5955558ba8bb15a3fdce49dfd914682ef3ea',
'1474e1884422b5b2096d3b7a20fd4bdf388af7e0',
'99c0024eacc275d13f719afd59357f7d12f02b77',
...
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@@ -91,14 +91,14 @@ rule Fig2_bistability:
rule Fig3_ground_state_chi1:
input:
os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'Analysis/pop_rates.json'),
os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'Analysis/pop_LvR.json'),
os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'Analysis/corrcoeff.json'),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'recordings', '-'.join((SIM_LABELS['Fig3'], 'spikes-{area}-{pop}.npy'))),
os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'Analysis/pop_rates.json'),
os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'Analysis/pop_LvR.json'),
os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'Analysis/corrcoeff.json'),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'recordings', '-'.join((SIM_LABELS['Fig3']
[0]
, 'spikes-{area}-{pop}.npy'))),
area=['V1', 'V2', 'FEF'], pop=population_list),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'Analysis', 'rate_time_series_full', 'rate_time_series_full_{area}.npy'),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'Analysis', 'rate_time_series_full', 'rate_time_series_full_{area}.npy'),
area=['V1', 'V2', 'FEF']),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3'], 'Analysis', 'rate_time_series_auto_kernel', 'rate_time_series_auto_kernel_{area}.npy'), area=['V1', 'V2', 'FEF']),
expand(os.path.join(DATA_DIR, SIM_LABELS['Fig3']
[0]
, 'Analysis', 'rate_time_series_auto_kernel', 'rate_time_series_auto_kernel_{area}.npy'), area=['V1', 'V2', 'FEF']),
output:
'Fig3_ground_state_chi1.eps'
shell:
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