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Commit 121b5144 authored by Maximilian Schmidt's avatar Maximilian Schmidt
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Add comment on requirements for dynamics manuscript figures

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1 merge request!1Add all necessary files for the multi-area model
......@@ -191,8 +191,14 @@ In addition, reproducing the figures of [1] requires networkx, python-igraph, py
In addition, Figure 7 of [1] requires installing the `infomap` package to perform the map equation clustering. See <http://www.mapequation.org/code.html> for all necessary information.
Similarly, reproducing the figures of [3] requires statsmodels, networkx, pyx, python-louvain, which can be installed by executing:
`pip install -r figures/Schmidt2018_dyn/additional_requirements.txt`
The SLN fit in `multiarea_model/data_multiarea/VisualCortex_Data.py` and `figures/Schmidt2018/Fig5_cc_laminar_pattern.py` requires an installation of R and the R library `aod` (<http://cran.r-project.org/package=aod>). Without R installation, both scripts will directly use the resulting values of the fit (see Fig. 5 of [1]).
The calculation of BOLD signals from the simulated firing rates for Fig. 8 of [3] requires an installation of R and the R library `neuRosim` (<https://cran.r-project.org/web/packages/neuRosim/index.html>).
## Contributors
All authors of the publications [1-3] made contributions to the
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