diff --git a/README.md b/README.md index 5506a9a1f36913fc8ba29367f2e85bb8fbf5132a..27f6b39778d4fc4e8d4b1b543e228421033c88de 100644 --- a/README.md +++ b/README.md @@ -191,8 +191,14 @@ In addition, reproducing the figures of [1] requires networkx, python-igraph, py In addition, Figure 7 of [1] requires installing the `infomap` package to perform the map equation clustering. See <http://www.mapequation.org/code.html> for all necessary information. +Similarly, reproducing the figures of [3] requires statsmodels, networkx, pyx, python-louvain, which can be installed by executing: + +`pip install -r figures/Schmidt2018_dyn/additional_requirements.txt` + The SLN fit in `multiarea_model/data_multiarea/VisualCortex_Data.py` and `figures/Schmidt2018/Fig5_cc_laminar_pattern.py` requires an installation of R and the R library `aod` (<http://cran.r-project.org/package=aod>). Without R installation, both scripts will directly use the resulting values of the fit (see Fig. 5 of [1]). +The calculation of BOLD signals from the simulated firing rates for Fig. 8 of [3] requires an installation of R and the R library `neuRosim` (<https://cran.r-project.org/web/packages/neuRosim/index.html>). + ## Contributors All authors of the publications [1-3] made contributions to the