Merge pull request #1298 from FZJ-INM1-BDA/fix_corticalLayer

tmp fix cortical layer

src/atlasComponents/sapi/constants.ts

@@ -14,5 +14,6 @@ export const IDS = {
     JBA29: "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-290",
     JBA30: "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-300",
     WAXHOLMV4: "minds/core/parcellationatlas/v1.0.0/ebb923ba-b4d5-4b82-8088-fa9215c2e1fe-v4",
+    CORTICAL_LAYERS: "juelich/iav/atlas/v1.0.0/3",
   }
 }

src/atlasComponents/sapi/sapi.service.ts

@@ -13,6 +13,7 @@ import {
 import { FeatureType, PathReturn, RouteParam, SapiRoute } from "./typeV3";
 import { BoundingBox, SxplrAtlas, SxplrParcellation, SxplrRegion, SxplrTemplate, VoiFeature, Feature } from "./sxplrTypes";
 import { parcBanList, speciesOrder } from "src/util/constants";
+import { IDS } from "./constants";
 
 export const useViewer = {
   THREESURFER: "THREESURFER",
@@ -514,6 +515,11 @@ export class SAPI{
     const map = await this.getLabelledMap(parcellation, template)
 
     for (const regionname in map.indices) {
+      if (parcellation.id === IDS.PARCELLATION.CORTICAL_LAYERS) {
+        if (regionname.includes("left") || regionname.includes("right")) {
+          continue
+        }
+      }
       for (const { volume: volumeIdx, fragment, label } of map.indices[regionname]) {
         const { providedVolumes } = map.volumes[volumeIdx]
         if (!("neuroglancer/precomputed" in providedVolumes)) {

src/atlasComponents/sapi/translateV3.ts

@@ -287,7 +287,17 @@ class TranslateV3 {
       segLayerSpec.layer.labelIndicies.push(label)
       segLayerSpec.region.push(region)
     }
+    const { ['@id']: mapId } = map
     for (const regionname in map.indices) {
+      /**
+       * temporary fix
+       * see https://github.com/FZJ-INM1-BDA/siibra-python/issues/317
+       */
+      if (mapId === "siibra-map-v0.0.1_bigbrain-cortical-labelled") {
+        if (regionname.includes("left") || regionname.includes("right")) {
+          continue
+        }
+      }
       for (const index of map.indices[regionname]) {
         const { volume:volumeIdx=0, fragment, label } = index
         if (!label) {