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Commit 96697f4a authored by Christian Schiffer's avatar Christian Schiffer Committed by Christian Schiffer
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Added LGB-lam 1-6 to bigbrain.json

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src/res/ext/bigbrain.json
+ 192
− 28
View file @ 96697f4a
...@@ -622,8 +622,7 @@ ...@@ -622,8 +622,7 @@
"ngId": "v3v", "ngId": "v3v",
"status": "fully mapped", "status": "fully mapped",
"labelIndex": 1, "labelIndex": 1,
"position": [ "position": [],
],
"rgb": [ "rgb": [
83, 83,
179, 179,
...@@ -661,33 +660,198 @@ ...@@ -661,33 +660,198 @@
"relatedAreas": [] "relatedAreas": []
} }
] ]
}, },
{ {
"name": "lateral occipital cortex", "name": "lateral occipital cortex",
"children": [ "children": [
{ {
"name": "Area hOc5 (LOC)", "name": "Area hOc5 (LOC)",
"ngId": "v5", "ngId": "v5",
"status": "fully mapped", "status": "fully mapped",
"labelIndex": 1, "labelIndex": 1,
"position": [ "position": [],
], "rgb": [
"rgb": [ 255,
255, 0,
0, 0
0 ],
], "children": [],
"children": [], "fullId": {
"fullId": { "kg": {
"kg": { "kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgSchema": "minds/core/parcellationregion/v1.0.0", "kgId": "04674a3c-bb3a-495e-a466-206355e630bd"
"kgId": "b40afb5a-e6a1-47b6-8a3e-1f8a20fbf99a" }
} },
"relatedAreas": []
}
]
}
]
}
]
},
{
"name": "diencephalon",
"children": [
{
"name": "cerebral nuclei",
"children": [
{
"name": "thalamus",
"children": [
{
"name": "metathalamus",
"children": [
{
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam1 (CGL, Metathalamus)",
"ngId": "LGB-lam1",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
}, },
"relatedAreas": [] {
} "name": "metathalamus",
] "children": [
}] {
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam2 (CGL, Metathalamus)",
"ngId": "LGB-lam2",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
},
{
"name": "metathalamus",
"children": [
{
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam3 (CGL, Metathalamus)",
"ngId": "LGB-lam3",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
},
{
"name": "metathalamus",
"children": [
{
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam4 (CGL, Metathalamus)",
"ngId": "LGB-lam4",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
},
{
"name": "metathalamus",
"children": [
{
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam5 (CGL, Metathalamus)",
"ngId": "LGB-lam5",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
},
{
"name": "metathalamus",
"children": [
{
"name": "lateral geniculate body",
"children": [
{
"name": "LGB-lam6 (CGL, Metathalamus)",
"ngId": "LGB-lam6",
"status": "fully mapped",
"labelIndex": 1,
"position": [],
"children": [],
"fullId": {
"kg": {
"kgSchema": "minds/core/parcellationregion/v1.0.0",
"kgId": "29335a69-4241-422a-a91c-117bc3bc8fa8"
}
},
"relatedAreas": []
}
]
}
]
}
]
}
]
} }
] ]
} }
......
src/res/ext/bigbrainNehubaConfig.json
+ 211
− 1
View file @ 96697f4a
...@@ -223,7 +223,7 @@ ...@@ -223,7 +223,7 @@
0, 0,
0, 0,
1, 1,
-58788284 -58788284
], ],
[ [
0, 0,
...@@ -268,6 +268,216 @@ ...@@ -268,6 +268,216 @@
] ]
] ]
}, },
"LGB-lam1": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam1/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
[
1,
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0,
-70677184.0
],
[
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],
[
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-58788284.0
],
[
0,
0,
0,
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]
]
},
"LGB-lam2": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam2/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
[
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],
[
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],
[
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-58788284.0
],
[
0,
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]
]
},
"LGB-lam3": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam3/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
[
1,
0,
0,
-70677184.0
],
[
0,
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-7290000.0
],
[
0,
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1,
-58788284.0
],
[
0,
0,
0,
1
]
]
},
"LGB-lam4": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam4/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
[
1,
0,
0,
-70677184.0
],
[
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0,
-7290000.0
],
[
0,
0,
1,
-58788284.0
],
[
0,
0,
0,
1
]
]
},
"LGB-lam5": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam5/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
[
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-70677184.0
],
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],
[
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],
[
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]
]
},
"LGB-lam6": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2020_11_11_LGB-lam/LGB-lam6/",
"segments": [
"0"
],
"selectedAlpha": 0.45,
"notSelectedAlpha": 0,
"transform": [
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],
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],
[
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],
[
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]
]
},
"cortical layers": { "cortical layers": {
"type": "segmentation", "type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2019_05_27_cortical_layers", "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2019_05_27_cortical_layers",
......
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