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Unverified Commit 6047b0c9 authored by Timo Dickscheid's avatar Timo Dickscheid Committed by GitHub
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Improved the langauge in first subection of connectivity browser documentation

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# Exploring connectivity
# Exploring a connectivity matrix for the selected brain parcellation
Powered by <https://github.com/FZJ-INM1-BDA/HBP-connectivity-component>, the interactive atlas viewer allows the exploration of connectivity of parcellation regions, based on datasets curated in HBP Knowledge Graph.
Via the <https://github.com/FZJ-INM1-BDA/HBP-connectivity-component>, the interactive atlas viewer allows interactive exploration of a connectivity matrix, that is defined for the currently selected brain parcellation and available from the HBP Knowledge Graph.
Currently, connectivity data is explorable for the parcellation `JuBrain Cytoarchitectonic Atlas`, which is available in template spaces `MNI Colin 27` and `ICBM 2009c Nonlinear Asymmetric`.
As of now, this function is only available for the `JuBrain Cytoarchitectonic Atlas.
## Getting started
## Launching the connectivity browser
- Select parcellation `JuBrain Cytoarchitectonic Atlas` and click on a region to bring up a context-specific menu
- Select the `JuBrain Cytoarchitectonic Atlas` from the list of parcellations (available for the `MNI Colin 27` and `ICBM 2009c Nonlinear Asymmetric` templates), and click on any brain region to bring up its context menu.
[![](images/region_menu_with_connectivity.png)](images/region_menu_with_connectivity.png)
- Click the `Connectivity` button, available datasets for connectivity will be displayed
- Select `Connectivity` to select one of the available connecitivty matrices. Note that this list will be growing in the near future, to inlude connectivity information from different sources.
[![](images/connectivity_dataset_menu.png)](images/connectivity_dataset_menu.png)
- Click on a dataset (e.g. `1000 Brain Study - DTI connectivity`) to explore the connectivity data associated with it.
## Working with connectivity data
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