triage: fixing backwards compatibility of waxholm and allen

src/atlasViewer/atlasViewer.urlService.service.ts

@@ -94,9 +94,25 @@ export class AtlasViewerURLService{
        */
       const searchparams = new URLSearchParams(window.location.search)
  
+      /**
+       * TODO
+       * triage: change of template and parcellation names is breaking old links
+       * change back when camilla/oli updated the links to new versions
+       */
+
       /* first, check if any template and parcellations are to be loaded */
-      const searchedTemplatename = searchparams.get('templateSelected')
-      const searchedParcellationName = searchparams.get('parcellationSelected')
+      const searchedTemplatename = (() => {
+        const param = searchparams.get('templateSelected')
+        if (param === 'Allen Mouse') return `Allen adult mouse brain reference atlas V3`
+        if (param === 'Waxholm Rat V2.0') return 'Waxholm Space rat brain atlas v.2.0'
+        return param
+      })()
+      const searchedParcellationName = (() => {
+        const param = searchparams.get('parcellationSelected')
+        if (param === 'Allen Mouse Brain Atlas') return 'Allen adult mouse brain reference atlas V3 Brain Atlas'
+        if (param === 'Whole Brain (v2.0)') return 'Waxholm Space rat brain atlas v.2.0'
+        return param
+      })()
 
       if (!searchedTemplatename) {
         const urlString = window.location.href

src/res/ext/waxholmRatV2_0NehubaConfig.json

-{"globals":{"hideNullImageValues":true,"useNehubaLayout":true,"useNehubaMeshLayer":true,"useCustomSegmentColors":true},"rotateAtViewCentre":true,"zoomAtViewCentre":true,"zoomWithoutCtrl":true,"hideNeuroglancerUI":true,"rightClickWithCtrl":true,"enableMeshLoadingControl":true,"disableFixedPointObliqueRotation":true,"layout":{"useNehubaPerspective":{"fixedZoomPerspectiveSlices":{"sliceViewportWidth":1000,"sliceViewportHeight":1000,"sliceZoom":51263,"sliceViewportSizeMultiplier":2},"centerToOrigin":true,"mesh":{"removeBasedOnNavigation":true,"flipRemovedOctant":true},"removePerspectiveSlicesBackground":{"mode":"=="},"drawSubstrates":{"color":[0.5,0.5,1,0.2]},"drawZoomLevels":{"cutOff":15000}}},"dataset":{"imageBackground":[0,0,0,1],"initialNgState":{"showDefaultAnnotations":false,"layers":{"template":{"type":"image","source":"precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/templates/v1.01/t2star_masked","transform":[[1,0,0,-9550781],[0,1,0,-24355468],[0,0,1,-9707031],[0,0,0,1]]},"templateUnMasked":{"type":"image","visible":false,"source":"precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/templates/v1.01/t2star","transform":[[1,0,0,-9550781],[0,1,0,-24355468],[0,0,1,-9707031],[0,0,0,1]]},"whole":{"type":"segmentation","source":"precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/parcellations/v2","selectedAlpha":0.35,"transform":[[1,0,0,-9550781],[0,1,0,-24355468],[0,0,1,-9707031],[0,0,0,1]]}},"navigation":{"pose":{"position":{"voxelSize":[39062.5,39062.5,39062.5],"voxelCoordinates":[-1.5317133665084839,-146.45941162109375,20.52083969116211]}},"zoomFactor":59702.66654390316},"perspectiveOrientation":[-0.6278747916221619,-0.43671634793281555,0.4761661887168884,0.4339560568332672],"perspectiveZoom":379767.21993194974}}}
\ No newline at end of file
+{
+  "globals": {
+    "hideNullImageValues": true,
+    "useNehubaLayout": true,
+    "useNehubaMeshLayer": true,
+    "useCustomSegmentColors": true
+  },
+  "rotateAtViewCentre": true,
+  "zoomAtViewCentre": true,
+  "zoomWithoutCtrl": true,
+  "hideNeuroglancerUI": true,
+  "rightClickWithCtrl": true,
+  "enableMeshLoadingControl": true,
+  "disableFixedPointObliqueRotation": true,
+  "layout": {
+    "useNehubaPerspective": {
+      "fixedZoomPerspectiveSlices": {
+        "sliceViewportWidth": 1000,
+        "sliceViewportHeight": 1000,
+        "sliceZoom": 51263,
+        "sliceViewportSizeMultiplier": 2
+      },
+      "centerToOrigin": true,
+      "mesh": {
+        "removeBasedOnNavigation": true,
+        "flipRemovedOctant": true
+      },
+      "removePerspectiveSlicesBackground": {
+        "mode": "=="
+      },
+      "drawSubstrates": {
+        "color": [
+          0.5,
+          0.5,
+          1,
+          0.2
+        ]
+      },
+      "drawZoomLevels": {
+        "cutOff": 15000
+      }
+    }
+  },
+  "dataset": {
+    "imageBackground": [
+      0,
+      0,
+      0,
+      1
+    ],
+    "initialNgState": {
+      "showDefaultAnnotations": false,
+      "layers": {
+        "template": {
+          "type": "image",
+          "source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/templates/v1.01/t2star_masked",
+          "transform": [
+            [
+              1,
+              0,
+              0,
+              -9550781
+            ],
+            [
+              0,
+              1,
+              0,
+              -24355468
+            ],
+            [
+              0,
+              0,
+              1,
+              -9707031
+            ],
+            [
+              0,
+              0,
+              0,
+              1
+            ]
+          ]
+        },
+        "templateUnMasked": {
+          "type": "image",
+          "visible": false,
+          "source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/templates/v1.01/t2star",
+          "transform": [
+            [
+              1,
+              0,
+              0,
+              -9550781
+            ],
+            [
+              0,
+              1,
+              0,
+              -24355468
+            ],
+            [
+              0,
+              0,
+              1,
+              -9707031
+            ],
+            [
+              0,
+              0,
+              0,
+              1
+            ]
+          ]
+        },
+        "whole": {
+          "type": "segmentation",
+          "source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/WHS_SD_rat/parcellations/v2",
+          "selectedAlpha": 0.35,
+          "transform": [
+            [
+              1,
+              0,
+              0,
+              -9550781
+            ],
+            [
+              0,
+              1,
+              0,
+              -24355468
+            ],
+            [
+              0,
+              0,
+              1,
+              -9707031
+            ],
+            [
+              0,
+              0,
+              0,
+              1
+            ]
+          ]
+        }
+      },
+      "navigation": {
+        "pose": {
+          "position": {
+            "voxelSize": [
+              39062.5,
+              39062.5,
+              39062.5
+            ],
+            "voxelCoordinates": [
+              -1.5317133665084839,
+              -146.45941162109375,
+              20.52083969116211
+            ]
+          }
+        },
+        "zoomFactor": 59702.66654390316
+      },
+      "perspectiveOrientation": [
+        -0.6278747916221619,
+        -0.43671634793281555,
+        0.4761661887168884,
+        0.4339560568332672
+      ],
+      "perspectiveZoom": 379767.21993194974
+    }
+  }
+}
\ No newline at end of file