DifShell and DifBuffer implementation

Created by: asiaszmek

This is based on the work of Subhasis Ray and the genesis implementation of difbuffers and difshells.

I tested this implementation by running a simple model of a one dendritic segment with one Ca channel and a bunch of different calcium scenarios. I ran this model with one difshell and the Ca channel; two and three difshells with the Ca channel; with two difshells, one buffer and the Ca channel; with a difshell and a pump and the Ca channel; one difshell and one difbuffer without the Ca channel but out of equilibrium, three difshells and one difbuffer without the Ca channel and out of equilibrium. In cases of Ca influx I compared model's output to results given by genesis implementation of the same model. In out of equilibrium cases I compared it to theoretical solutions.

Created by: dilawar

Can you add a Python test script to PR?

Test scripts goes to tests/python folder.

Ill integrate it into build system.

Created by: asiaszmek

I'll do it on Monday, if it's OK with you. Asia On Sat, Jan 21, 2017 at 08:10:36AM -0800, Dilawar Singh wrote:

Can you add a Python test script to commit?

Test scripts goes to tests/python folder.

Ill integrate it into build system.

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Merged by: dilawar at 2017-01-23 06:25:55 UTC

Created by: dilawar

Dear @asiaszmek

I've merged these changes into this repo. This repository mainly to keep snapshot of stable version. We need to cleanup our documentation so there is less scope for confusion.

These changes should be visible on our development repository https://github.com/BhallaLab/moose-core . Any further changes can be submitted to this repository via pull request.

best, Dilawar