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  1. Mar 02, 2018
  2. Feb 28, 2018
    • Dilawar Singh's avatar
      b3625c0d
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 0c33b2c333..49d5b3ef6b · 6d651b60
      Dilawar Singh authored
      49d5b3ef6b Merge pull request #255 from dilawar/master
      f498d7c6a4 Merge branch 'master' of github.com:dilawar/moose-core
      c09dd9936f Cut down on unneccessary looping. It is logically equivalent to original block.
      aab34e125d Merge branch 'master' into master
      3568083113 replace has_key with python3 compatible statement.
      026d0a39b1 updated pre-commit config.
      b811def3bd Merge branch 'master' of github.com:BhallaLab/moose-core
      5bc1e1410a Merge pull request #254 from upibhalla/master
      b08b888f56 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      945fb6b961 Added funcDt to rdesigneur arguments, set sensible defaults
      760f554966 Update Function.cpp
      8e9bcb58ac Merge pull request #253 from upibhalla/master
      2f8dc9fcfe Merge branch 'master' of https://github.com/BhallaLab/moose-core
      b55e1a74ea Update to Synapse to permit set/get access to addSpike. Cascaded onto all SynHandlers. Update to rdesigneur to permit fullscreen display of Moogli.
      6eca687a68 Added deploy section in travis. Deploy on PyPi. Needs to add script t… (#251)
      c8f9101621 Fixed cmake error on osx when not compiled in debug mode. Affect only >=cmake-3.6
      f6ab07d0ef Update README.md
      0d3f850fe5 Update README.md
      cc94e3bd61 Set VERSION_MOOSE only
      948406bc17 Marked as release candidate 3.2.0rc1.
      b675c4d1bf Fixed build failure due to newline in output variable.
      bf8d39351e Add git hash to version.
      d95e58650f Python wheel for pymoose (#250)
      edbb4ce966 Fixing VERSION; MOOSE_VERSION; project name is moose-core.
      e245ef6a4d call project moose-core.
      9061927ca7 Build GSL with fPIC.
      230466ff32 updated dockerfile. Added missing gsl library.
      69bc228b34 rename to pymoose.
      41ef965e75 Heredocs are not supported in docker.
      f370b4aa19 Docker file has the script inline.
      b8b9679943 Time to merge into master branch.
      9c7241f1bd Wheels are built. Now use manylinux docker file to build them.
      c439f55046 Build in manylinux environment.
      108f71809d Wheel is created.
      d08ddf290f removed file.
      9d654b4cba no need to link with PYTHON_LIBS.
      
      git-subtree-dir: moose-core
      git-subtree-split: 49d5b3ef6b585ff1c64734f447ac08cd67d9996a
      6d651b60
  3. Feb 02, 2018
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from bda97426c8..0c33b2c333 · e0b8959c
      Dilawar Singh authored
      0c33b2c333 remove setup.py. It has been renamed to setup.cmake.py to avoid confusion. This file is to be used only by cmake.
      079730d06d Added missing package data.
      59d374fa48 removed deprecated setup.py file.
      9d3f7439f6 Merge remote-tracking branch 'origin/chamcham'
      28ded4be72 matplotlib is not essential dependencies in tests or in any moose import. If NSDF support is not found, do not fail the test.
      b7294b2814 More informative message if plot utilities are not loaded.
      4678f1a263 Merge branch 'master' of github.com:BhallaLab/moose-core
      667a3d254f more detailed error message if neuroml2 import fails.
      5d504a5a1e Merge branch 'master' of https://github.com/BhallaLab/moose-core
      c5c5854fe8 Added extra args to setup.py.
      07f19011c8 install using debian layout.
      0c3c2b7416 Merge pull request #249 from dilawar/master
      03951bd314 When build in DEBUG mode, we never go to negative values in this test script. This causes test to fail on some unix platform in DEBUG mode.
      2e6524b9cf if libneuroml and pyneuroml is not found, do not load NML2 support .     Ignore silently. Print help message when user call NML2 related function.
      30fc7d0636 Turned it into a module so 'absolute_import' can work.
      d9853b5322 Merge branch 'chennapoda'
      00170beb15 Merge pull request #247 from dilawar/master
      b0adf404cc Added libneuroml and pyneuroml in dependencies on travis.
      0d831227cd renamed tests/python/neuroml to test/python/_neuroml so it does not clash with import neuroml. Ready to be a PR. Integrate BhallaLab/moose-core#246 into moose import system. Exposed moose.mooseReadNML2 function for gui etc. Added dummy docstring. Deleted redundant files.
      792b4e7d43 Added nml2 test script.
      1e3413349e Integrated NML2 support BhallaLab/moose-core#246 Made is compatible with python2/python3. Needs testing before merging into upstream.
      596b9d2e1a Merge branch 'master' of github.com:BhallaLab/moose-core
      740f9c6eb4 Added jenkinsfile for local testing over jenkins.
      7dcd970481 Merge pull request #246 from pgleeson/master
      bb8c8a94b3 Minor edits
      c2872f7d4e Merge pull request #2 from BhallaLab/master
      a520f8aed8 t test script to test BhallaLab/moose-core#242 .
      d6ba37e003 Merge pull request #244 from upibhalla/master
      d8ad6d6e53 Exposed field Stoich::allowNegative to control whether the solver permits negative values in simulations.
      0e460485e5 Merge pull request #243 from upibhalla/master
      f2553db028 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      32430d1f1d Oops, another silly error in the negative concentration test.
      a2fee560b8 Merge pull request #242 from upibhalla/master
      53244691c4 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      369b26c369 Fixed major error in GSL solver in VoxelPools. I had introduced this when putting in check for negative concs, for some reason first set of tests didn't identify this bug. Works for several tests now.
      394032dcfe Merge pull request #241 from hrani/master
      bce317e34c Few clean up while reading and writing from/to SBML
      d7dbc9997a Added flag Stoich::allowNegative. This defaults to False. If true it allows pools to take negative concs, needed for general ODE solutions but illegal for chemical systems.
      158db52f1f Merge pull request #238 from BhallaLab/brew
      8c93330ca3 Improved temperature dep
      afd925b101 Merge branch 'master' into brew
      818ad2df5f Improved unit handling
      54b505d6da Merge pull request #237 from hrani/master
      fe628d39ae Test homebrew formula as well on travis.
      337bab4ce5 Update .travis.yml
      2b54325545 clean up in print stm
      a592ec8875 existence of model path is checked, clean check is made for enzyme and function before writting into file
      1398206c9d Merge branch 'master' of https://github.com/BhallaLab/moose-core
      3b920f3fc4 Improvements
      3cc29d3fe5 Improved saving of rates
      24710aa103 More general
      2a1b06477f Installable
      f2188a3903 Read populations/inputs from nml
      fc689f018f Allowing -nogui
      1bc8a23cfc qMerge branch 'master' of https://github.com/BhallaLab/moose-core
      abf8e5465a Now works with libNeuroML
      2ec562cba7 Working HH example!
      010b0f9db8 Passive test on new cell
      2cb3edaf20 Working passive example
      cdfb8e1fc7 More tests
      3f6de38f50 Not completely failing...
      152857db78 Ignore build dir
      2b36a6b4d8 Update example files
      f7228682d4 Merge branch 'BhallaLab-master'
      61453b8a9c Merge branch 'master' of https://github.com/BhallaLab/moose-core into BhallaLab-master
      9cc0e101d0 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      f3c6a71b9c added python3 for compliation which was removed
      0920cfaf1b instead of importing rmoogli in init file replaced in rdesigneur.py,checking if travis passes for python3
      6a4b102099 Updated pre-commit hooks in chamcham branch.
      411a71798a Updated moose_test module. Function test( ) can accept timeout parameter.
      226e8662c4 Force --install-layout=deb when on debian/ubuntu.
      7032ffdfe7 Fixed kkit tests.
      f0ec0c3759 No inbuild test should depends on matplotlib.
      ccb43d16a7 Fixes to debian related python install. When --prefix=/usr is given, its installs in site-packages rather than dist-pacakges.
      65954b71e8 Minor changes to test script: Dont wait till test is over to print which test is being executed.
      327d0aa4ff Updated sanity test with version information in ctest.
      8bc1994345 __version__ = version( ) is both python2 and python3 compatible.
      fac27902c2 Added __version__ string in __init__.py file.
      ab03233775 Merge branch 'chamcham' of github.com:BhallaLab/moose-core into chamcham
      a567aa1d5b Added __version__ and version( ) info.
      85f1f1ef2f Added `moose.test` to test `moose-examples` online (#189)
      6fe5f5c7c4 Using absolute imports in 3.1.3  (#190)
      027e40bfdb Fixes absolute import in chamcham branch as well.
      474faafe51 Python3 compatible import mechanism,  NML parser fixes (#188)
      4e915e0b0f Fixes to chemUtil import.
      13e3cb8ad8 More import fixes.
      25d3c43252 Merge branch 'chamcham' of github.com:BhallaLab/moose-core into chamcham
      2ed651fc37 Fixed the plot util function (again).
      4d4b275958 Deleted old/junk functions. Force python2 to honor python3 style import.
      b899ada38b More fixes in plot utility library. If some function breaks on python3/python2, do not import the whole utility library.
      f2a6d7b8d1 Removed junk utility functions. Forced python3 import style (PEP8).
      a7a03c7852 Some renames.
      ff84f3d0dd Added another function plotTables wrapper on plotRecords .
      2fb7676353 Fixed error in plotRecords functions.
      b32a39b444 Merge commit '9355916f' into chamcham
      1eb8ca281c More changes to NetworkML BhallaLab/moose-core#218 .
      0e0615c816 Fixes to #186 are integrated into chamcham release.
      4a0d4f37df Fixed a typo in install instructions.
      3498c1801a Bumped version to 3.1.2
      fc14920945 Added AUTHOR and bumped the version up.
      b5898ac306 Added missing 'moose.chemUtil' module.
      d7c938283e Fixed revision issue.
      1c1bbe059d Added GetRevision macro to get current timestamp.
      ba9ec990eb Write the version to VERSION file so setup.py file can use it.
      4e9aa317f2 Not reading version file anymore.
      315837d775 Changes from master branch.
      557184389c Packaging related changes from master branch to chamcham branch.
      4d5c6a5d87 NO version file should be in-source.
      de25310563 Merge commit 'efa006c9' into chamcham
      52eeb541ef CMake related bugfixes from master branch.
      9df1ba7fad Merge commit 'efc1324a' into chamcham
      815a79a9db Fixed the VERSION file creation.
      726e71c063 cleanup in demo, filemenu links
      d5c5391949 adding missing files
      5291f7c4fc missing folder/files
      760274cbcc Changes made to gui to work with moose-core
      be92816c83 Merge commit '36ca236d' into chamcham
      74b43c3ef6 Enabled travis emails to developers for this release branch.
      76bf85476e Related to #169 Dropped the support for VERSION file. 1) It would cause lot of merge issues if VERSION file is left in source tree.
      00ea9d3c10 Close #169. Renamed MOOSE_VERSION to _MOOSE_VERSION.
      da0db901b4 Changed MOOSE_VERSION to __VERSION__ since new cmake 3.7.1 sets it to empty. See cmake policy CMP0048.
      a6a05eff71 Merge commit '41be11d5' into chamcham
      b8a8b6d150 hotfix from branch issue167.
      8a6346d029 Merge branch 'chamcham' of github.com:BhallaLab/moose-core into chamcham
      7d4cf8b84b Changes from master branch. Test on macosx as well as linux. Quantified import to avoid self-recursion. Ran autopep8 on files.
      de3d964f65 Changes from master branch. Test on macosx as well as linux.
      9156b897da Fixes for issue #164. Also hotfix for branch chamcham.
      34429e228e Using correct import
      e2574fb25f Uses the MOOSE_VERSION value from CMakeLists.txt in setup.py
      
      git-subtree-dir: moose-core
      git-subtree-split: 0c33b2c3339d8a43f9de1fb31573cbea621739f6
      e0b8959c
  4. Jul 01, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 95fe1a7..891f2f8 · 750df413
      Dilawar Singh authored
      891f2f8 Removed trailing spaces from code by pre-commit hook utility.
      0ed2535 Cherry-pick "Added connectionList field to SparseMsg to allow direct control over connection matrix. Some sanity checks in SparseMatrix to go with this"
      d62d10d The bug on travis is still not bypassed. If this does not work, disable DOQCS tests on OSX.
      618b4d6 Install moose on osx as well. Prerequisite to test DOQCS.
      f717f82 Merge branch 'master' of github.com:BhallaLab/moose-core
      908820e Lets see if this is a good workaround travis issue travis-ci/travis-ci#6522.
      e251f53 Lets see if is a workaround fixes the OSX bug.
      4ff7cff Hopefully this will fix issue on travis-osx build failure. Related to travis-ci/travis-ci#6522.
      590c09e Don't use timeout in script. So that we can run on macosx as well. Removed timeout command from script. Now it can run on OSX as well.
      e2f8afd Only test doqcs on LinuxOS, not on MacOSX.
      dc7b55a Fix to travis-ci/travis-ci#6307.
      54b8471 Merge branch 'master' of github.com:BhallaLab/moose-core
      18c8759 Test docqs agains gsl version/python2 moose-core.
      d6ca9cc Fixes by pre-commit hooks. - Removed trailing whitespaces automatically. - insert * coding - utf8 * line on top of each python script automatically.
      d4a6939 Using version v0.8 now.
      f944afe Added pre-commit pip install pre-commit --user to activate it.
      030bfe0 Merge pull request #195 from dilawar/master
      d00a5d1 All tests are passing and new code is protected by appropriate macros.
      1959771 Merge branch 'async' of github.com:dilawar/moose-core
      0f6aba0 Merge branch 'master' of github.com:BhallaLab/moose-core
      ac0a4cd Added note on what to do.
      b3bf54e Slower version but results are same.
      6bc71c9 Async version is slower (80sec vs 70 sec).
      d838267 asyncing clock is not producing great results.
      eeaafbf Implemented first parallel version.
      166f84e Equivalent serial code which can easily be called from std::async now.
      e09a0c1 Merge pull request #194 from dilawar/master
      d2d1097 Added MACRO to integrate serial and parallel version.
      e68acd6 This is good but do parallelism at Clock.cpp
      4cebbca Rdesigneur has python3 default import : absolute_import.
      f431cca Merge branch 'master' of github.com:BhallaLab/moose-core
      85afa6d Some changes to Ksolve. Still seg-faults.
      47e023e Time to test the Gsolve performance when threads are enabled.
      2bbfd4f Commented out code appropriately.
      91c2da6 moose.test( ) is added not cmake but not enabled. Enable them once all scripts are fixed in moose-examples.
      a1699fc Optimized GSolve with default 2 threads.
      00a9d9e Removed the debug message. Lets check it now. By default it should be not slower than the default version.
      7700c07 Fast Ksolve with 2 default threads.
      d154eb3 Parallel ksolve.
      
      git-subtree-dir: moose-core
      git-subtree-split: 891f2f8bf7359d61f186c3792c6f12b61d8c0afb
      750df413
  5. Jun 22, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 2c3fe7516..052318cb4 · 0014d826
      Dilawar Singh authored
      052318cb4 [skip ci] Moved git precommit script into script. if someone wants to activate it in her repo, rename it to .pre-commit-config.yaml and enable it
      d15e77649 Removed legacy makefile #180. These appeared again because of push from subtree in moose repo. Sigh!
      ed708e01b No-longer supporting Makefile based old flow on travis.
      bea1f4a9d Integrated test script from PR BhallaLab/moose#218 . I need to confirm if results are correct.
      
      git-subtree-dir: moose-core
      git-subtree-split: 052318cb48027ca0c401a13be9fddd2b0d5a66b7
      0014d826
  6. Jun 21, 2017
  7. Jan 05, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 3f8c345..7c9fe23 · 0d12ebb0
      Dilawar Singh authored
      7c9fe23 Fixes to issue #167. (#168)
      3f077c1 Resolved merge conflict with Table.h
      9b175c8 Major bugfix for Table and derived class Streamer, to fix error introduced by duplicating the 'name' field which is already defined for Neutral. Minor bugfix for melement.cpp
      f0d4c02 Update INSTALL.md
      2737220 Fixes to issue165 (#166)
      a934676 Update .travis.yml
      601d06a Fixes to PYTHON3 build failure on travis.
      9d9d925 Tested locally for linux. The scripts seems to be fine on openSUSE-42.2
      93bbd4f By default travis pick up /opt/bin/python when `which python` is used. Do not use this construct in script. Moved travis related scripts to a hidden folder .travis.
      c0d3871 If python3 exists (installed on travis), then check for the compatibility otherwise don't.
      65a85da Almost there. Calling script from top of directory.
      0db2016 Make trusty default build environment. python3-matplotlib is not available by default.
      d8c1c6a setuid to root for linux script.
      4c90f04 Some more f...
      0d12ebb0
  8. Nov 17, 2016
  9. Nov 14, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from c2c32b9..ed5f015 · 6c8f2012
      Dilawar Singh authored
      ed5f015 Update README.md
      a4a5cc1 Fixed linking error compiling with new gcc.
      9a82850 Merge commit '912c550e28d1fccfd310c5968a07ae38dc60c698'
      0fb7431 Added option to explicitly set CMAKE_DL_LIBS flag (-ldl).
      da5fd97 Merge commit '9296cecdffbe647a929af4792360adbc3768e4bd'
      093e681 Disabled unused part of code #86.
      c698620 Merge commit '11af2e3b2ecd7b31aefa957412abb5b64ce54014'
      57714ae Fixes to VERSION bug. See #BhallaLab/moose#200
      59512e1 Merge commit '1d69d002939cc4b270ff4fc51e8a4800a6fbdad1'
      3adb8b3 removed a print statement
      9aa9405 Use git to generate version when not passed via command line. BhallaLab/moose#200 .
      2f8a48e Merge commit '18331bb5a2f6aa2918a4e49b178297a79e3c791b'
      c9714fd Merge branch 'master' of github.com:BhallaLab/moose-python-package
      df2186a Merge commit 'ec45fa526f0e2de2b49bf05f3f7f8ddb1c7ff463'
      
      git-subtree-dir: moose-core
      git-subtree-split: ed5f0151b5c12301b826e47e5a1daaaa7044a714
      6c8f2012
  10. Aug 16, 2016
  11. Jun 26, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 1318029..a15a538 · 2af833a0
      Dilawar Singh authored
      a15a538 Merge pull request #131 from dilawar/master
      1800283 Merge branch 'master' of github.com:dilawar/moose-core
      2ad812f Rdesigeur by sarthak,
      8e87707 Fixed the streamer test.
      e62ec09 Merge remote-tracking branch 'bhallalab/master'
      002edb6 Fix to BhallaLab/moose-core#130.
      d7ebbe7 No need to have header name in inverted commas.
      414a8d9 stimulustable is check and some more correction
      343a08a First version of model merging pools and reaction are done
      943f96f  clean up in notes field
      f2b71f5 Merge branch 'master' of http://github.com/BhallaLab/moose-core
      c742934 kkitUtil: check to see if the color goes beyond genesis color Sequence, _main.py: eliminated enzyme cplx pool to genesis under compartment
      9aca1c1 Merge pull request #128 from dilawar/master
      322093e Streamer uses name of the table whenever possible.
      5be9eb4 Added getName, setName to table. If these are set, use them in Streamer class to write the header of csv file.
      f9178d2 Merge branch 'master' of github.com:BhallaLab/moose-core
      3d420b0 species concentration/amount is calculated depending on the hasOnlySubstanceUnit flag
      9188681 Merge branch 'master' of github.com:BhallaLab/moose-core
      cf3d4f8 Merge branch 'master' of github.com:dilawar/moose-core
      4d98756 Write path without [0] in streamer numpy table instead of table name.
      9b143e4 reaction and enzyme are added with the ratelaw
      b2fbc15 Merge branch 'master' of http://github.com/BhallaLab/moose-core
      0a765fb Rules are added
      07a68b9 If -Wno-unused-but-set-variable is supported by compiler, enable it.
      d98241c Merge branch 'master' of github.com:BhallaLab/moose-core
      d22bfea Moved Doc from here to BhallaLab/moose . In docs folder.
      9f18f0a Merge pull request #125 from dilawar/master
      a942a4c Fixed the failed build on travis https://travis-ci.org/BhallaLab/moose-core/jobs/134133078
      3d6a8cc Added support to float and double to numpy format. Fixed some documentation about Streamer, correct dt is docstring. More assert statements in streamer test script.
      aada8c4 Merge branch 'master' of github.com:BhallaLab/moose-core
      303ad71 Changes for gcc4.4. on nargis.
      1af4a69 Temporary change before switching to another branch.
      0018c55 notes are written for species
      895766a species added
      a7e9509 paremeter and compartment info is read back to moose
      2b9076e  update with more details
      170739f Put some more utility inside namespace moose. When writing numpy format, do not write whole path in header. Just name would do.
      f01727c Merge remote-tracking branch 'bhallalab/master'
      7e95a6d A fix to failing unit-tests. When user writes /compt/a/b, inside MOOSE it is represented as /compt[0]/a[0]/b[0] which could be annoying for Streamer user. Just remove [0]. For other [n], don't do anything.
      21fe695 Bringing back some changed undone by bad merge strategy. This should now pass on travis.
      ca8d55b Merge branch 'master' of https://github.com/BhallaLab/moose-core
      c165976 Fixes issue dilawar/moose-core#3  (#123)
      c17df70 clean up in filename while writing into SBML
      db701fc Enzyme's are written
      320b0c3 Function and reaction are written
      a8bfc7c compartment and species are written
      008e25e moose Annotation like runtime,dts and plots are written
      3ba5e33 units are written
      bcfa3c7 Merge branch 'master' of http://github.com/BhallaLab/moose-core
      d3b3789 firstphase of write file
      4418691 For cmake, enable the c++11 support on compiler which supports it. This should fix ">>" to "> >" error in template parameters in boost code which is only supported in cmake build system.
      dc9d0c3 Merge branch 'master' of http://github.com/BhallaLab/moose-core
      156e762 python readSBML file
      2786757 Fixed #124. Not using gsl_rng in global rng. It is not working as expected in class RNG. Using Subha's mtrand() when boost or c++11 is not available.
      eecc171 Adding a small print statement about why assert failed in rdesigneur.
      6454673 Merge branch 'master' of github.com:BhallaLab/moose-core
      270f1d6 Fixed #112. Not using gsl_rng in global rng. It is not working as expected in class RNG. Using Subha's mtrand() when boost or c++11 is not available.
      738d9dc Fixed issue #124.  Adding the issue #124 file to repo for reference. Can't reproduce the error with latest commit (this and previous one).
      cc85cfb Update README.md
      af178bf This fixes the missing time column in streamer. dilawar/moose-core#3.
      9faf02e Don't rewrite the table path before writing them to csv in header. dilawar/moose-core#3.
      806f6a1 Checks if not of tables added are more than 0 or not. If zero, then disable the streamer. Notify the user. Issue dilawar/moose-core#3
      0a93eaa Importing <cstdio> so that it passes with legacy makefiles as well.
      4dc2a6c Merge branch 'master' of https://github.com/BhallaLab/moose-core
      56fdc36 Fixes to issue #116  (#120)
      357b1b5 Fixed the test script. Method rk4 is not good enough when using boost. Use rk5a.
      8057a8f Generate h5 name using tmpnam. If tests are run by two different users on the same system, there won't be any issue with permissions. However this makes testing bit harder during development.
      b01caf4 Fixes to gcc-5.x on Ubuntu-16.04.
      fc98bfc Adding random library to link flags.
      ceea4f0 Use RNG object rather than pointer. Can't figure out why pointer did not work well.
      ea5529d FIxed -std=c++11 error.
      014175d Fixed issue #116. Using real_distribution instead of int_distribution. Let the library take care of scaling to between 0 and 1.
      ab91625 Merge branch 'master' of github.com:BhallaLab/moose-core
      e23c827 Some temporary changes before merging. I forgot what there are. Probably RNG initialization is changed.
      cf73c1f Update of python setup file. (#118)
      51bcf63 Disabled part of code which checks for extension . On some platform it reutrns x86_64.so etc, which probably we don't want. In any case, if build fails on open build service, we can bring it back #78.
      fb558d8 Modifying SBML_LIBRARY related macros. Since libsbml is now distributed from mosoe repo as well.
      487587b test scripts points to directory commited by @subha #issue #94.
      e47a492 Update INSTALL.md
      13afeaf Update README.md
      8b33ae5 Merge branch 'master' of github.com:BhallaLab/moose-core
      1268296 Merge branch 'master' of github.com:BhallaLab/moose-core
      808ae94 Update INSTALL.md
      6316820 Update INSTALL.md
      2522f47 Merge branch 'master' of github.com:dilawar/moose-core
      3f13efd Temp commit.
      347e5b0 Update INSTALL.md
      d14e4e8 moved to appropriate doc folder.
      5a48285 CheckMOOSECompiler -> CheckCXXCompiler.
      5ecd06e Updated INSTALL.md file.
      0c42d28 Merge remote-tracking branch 'bhallalab/master'
      87c193d Deleted cymoose from master branch.
      e77361c Fixed moose building after moving _moose target to subdirectory.
      af97ec3 Cymoose remains only in my personal clone branch cymoose. Removing it from master branch.
      b3542f6 Cleaned up Cmakefile.
      7fec36b Moved pymoose target to its own directory.
      7575c55 Update test_ksolve.py
      904e32a Added missing cmake file.
      1998e27 Using ptr instead of object of RNG.
      1ee1427 Added ksolve test.
      fbf9d90 Test script for ksolve is modified. Total 40 pools.
      2ea5ed1 Separate file to check compiler macro.
      c7d3e15 Removed the copy constrcutor from RNG class.
      1acec97 GssaVoxelPools gets its won random number generator. Had to remove constantness of a function to be able to use uniform( ) or rng call.
      08fa1ed test display is changed a bit. Removed some hanging c++11 auto .
      c6bc8c3 Printing tests name during tests.
      4116cc5 More verbose output when tests are runnug. Added a macro which runs test.
      d1c77ce Replaced simple assert( doubleEq(a, b) ) with ASSERT_DOUBLE_EQ( "", a, b );
      
      git-subtree-dir: moose-core
      git-subtree-split: a15a538e22f0cd62de95532c2932156055d58673
      2af833a0
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