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  1. Jun 27, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-examples/' changes from 37bf0cc..7ab9e3c · f27ad439
      Dilawar Singh authored
      7ab9e3c Let static page generation fail.
      c26d7c7 Build using travis and deploy onto github pages.
      feeaf6b Added theme for static pages.
      ae1fecb Merge branch 'dirty' of github.com:BhallaLab/moose-examples
      c25e57e Passing locally.
      2a2db61 Moved the integration to branch 'dirty'
      83a516c Test the dirty branch with jekyll.
      9667dee Added jekyll to create static page.
      742362a Testing Jekyll and travis integration.
      9aa4a3d Prepare index.md  file post test.
      e885ea5 Modified shell script so it does not hang.
      828464a Code to update README.md file with broken scripts.
      9a6b3b1 Deploy keys are added. Testing...
      74fb0ae Set theme jekyll-theme-minimal
      a4e7ce1 Deploy to github pages. Testing.
      e3f9a41 Added code to deploy on moose-examples static page.
      ab45904 Default timeout is 30 secs [ skip ci ]
      3e30131 Added python-pygraphviz to dependencies.
      b825107 Added python-scipy on travis.
      73d8bff Merge branch 'master' into traub_2005
      60a9f7d Update README.md
      4d30457 Updated VClamp commandIn destFinfo name in test_tcr
      8846ae5 Fixes for nonexistent NRN data
      03735e8 Fixed syntax error
      24c349d Multiple workarounds to directory paths and data files from neuron
      ccc1039 Fixed typo with data directory creation in traub 2005
      a15893b Fixed issue where new ZombieCompartment breaks old code using Compartment
      024aa0e Added attempt to automatic data directory creation
      96a815c updated ref to old table API
      78dcbb1 Merge branch 'traub_2005' of https://github.com/BhallaLab/moose-examples into traub_2005
      bc5c37d Added fix for #28 (metaclass portability)
      b347fa4 Fixes to load-sbml script.
      202bb51 Merge branch 'master' of git://github.com/malav4994/moose-examples into PR-25
      a20f451 On this branch, making traub_2005 test with recent release. Added subha on this branch. Removed everyone else.
      ac68f92 Ignore the traub_2015 directory on travis BhallaLab/moose-examples#28.
      caaa45e Removed a png file [skip ci]
      cf27b12 Added python-h5py on travis. The hdf5 related scripts needs this module to run on travis.
      afbb591 Merge remote-tracking branch 'origin/traub_2005'
      dc92ae8 Include traub_2005 in scripts to be tested on travis.
      ee70916 If a script is timedout after 30sec, dont consider it a failure. Fixed the result status of timeout command on 14.04 as indicated in manual http://git.savannah.gnu.org/cgit/coreutils.git/tree/src/timeout.c
      9f70d7f Fixes to import in loadSbmlmodel file. Read SBML fails.
      bbb3fe0 Increased timeout to 3m and using 4 parallel process.
      b5a856e Using backend agg to overcome build failure on travis. This way we will not launch the graphics on travis.
      450b3da Removed debug print
      d34a833 Fix to issue 28
      41f5c8b modified some of the snippets files for documentation
      
      git-subtree-dir: moose-examples
      git-subtree-split: 7ab9e3cfd8d74f79a73282572d4df4301b6df976
      f27ad439
  2. Jun 23, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-examples/' changes from cd2a2b9..37bf0cc · b0021958
      Dilawar Singh authored
      37bf0cc This might pass with upcoming release 3.1.3.
      feef205 Merge branch 'master' of github.com:BhallaLab/moose-examples
      c41af29 import fix to another file.
      2d30a30 Output comparision of GPU & CPU (#26)
      7295a8f numpy.array changed to np.array
      664f843 Maximum timeout is 1m for all script.
      0458697 Fixes to one more script. Error due to merge conflicts.
      27fddec Updated script.
      0694972 Run scripts now launches 8 process in parallel.
      15d3aa7 Merge branch 'master' of github.com:BhallaLab/moose-examples
      62d6c58 Enabled trap in bash script. Kill running test when user presses ctrl+c.
      65fb8a8 Added beta cmake based test flow.
      987c3fb Moved CMakeLists.txt to _travis folder. Old bash style build system is sufficient.
      d4a081f Removed one more duplicate file.
      9b13403 Removed duplicate files.
      98b5eb0 Fixes to script. Runs fine now.
      c42aa93 One more fix.
      626221e Removed merge conflict.
      f1b0bc4 Fixed one more script to make it work.
      09ca09e Merge branch 'master' of github.com:BhallaLab/moose-examples
      204d5e4 This is removed b'cos Rdesignuer does the job
      8c7c00c can pass command line arguments also
      70f83d0 cleanup in return type from None to moose.shell
      fe4238b indentation for python3
      3e81764 indentation fixes for python3
      66f1bb0 Removed <<<<, ===  and >>> from improper merge.
      0719a5d Merge commit '349abe7e'
      7054325 mooseaddChemSolver is needed in loadSbmlModel file
      6116c7e Indentation cleanup
      9fd501a conflict cleanups
      fe297f6 indentation correction
      2b24c64 indentation correction
      0e329d5 Merge branch 'master' of http://github.com/BhallaLab/moose-examples
      7ce262e corrected indentation
      864776c added deleted files
      87a6963 temp deleted
      0f1e722 Resolved merge conflict
      0ff3b05 temp deletion
      69062d9 For crossComptSimpleReac a temp fix so that segfault doesn't occur, rest cleanup
      729f216 deleted unwanted files and added new files
      7318878 cleanups
      045aa11 Fixed assert by Upi
      2b16c59 Deleted temp files.
      3881f8a khali khali
      97599aa Fixed docstring on example.
      
      git-subtree-dir: moose-examples
      git-subtree-split: 37bf0cc0a733d5b4c61659f9eb6e747f57530273
      b0021958
  3. Jun 22, 2017