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  1. Jan 23, 2017
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from e49ca7d..2ba6bd5 · f0fd0e53
      Dilawar Singh authored
      2ba6bd5 cleanup
      d0f5918 replace writeKkit to moosewriteKkit
      cb067ac correct from writeKkit to mooseWriteKkit
      6b1bff4 Ubuntu16.04 with networkx and pygraphviz has some bug, for now small fix, automatic layout will be done spring_layout format
      dbe6875 Update .travis.yml
      8a71426 Update README.md
      fcbacd5 Added travis file to moose-gui.
      ddcfbdc Removed shebangs from python scripts.
      d5cf170 Fixed the address of Free Software Foundation Inc.
      b88d5cc Merge commit 'aca40347'
      e0cea9f Squashed 'moose-gui/' changes from 1ef13c9-1ef13c9
      
      git-subtree-dir: moose-gui
      git-subtree-split: 2ba6bd5d8e6b022edf3f3aa1a567462ab7ddf6ed
      f0fd0e53
  2. Nov 14, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from 1e5f537..e49ca7d · aca40347
      Dilawar Singh authored
      e49ca7d Changes Function symbol to summation symbol, objectedit.py function expr is not editable as this summation of pools, some cleanup with colors selection,Function which is now just summation object, set's up setN for output as input is nout
      328b8f5 for now function output connected to pool via setConc message, but there is "increment" which depend on the function input this will be fixed later
      16075b3 cleanup with colormap string from genesis file
      aa377ed resetup for multicompartment model before setting up the solver
      26d2be7 Changes made are related to functions which now doesn't need parent as pool but if exist like in case of genesis then it displays as its, setsolver: setting ticks to table, 18 is not required as its set default when table is created
      7ad2bb9 plot are saved to csv forms
      20a76af some more cleanup
      653b464 added units for Km, kcat is added which display in object editor
      cbf2c5e added units for volume which display in object editor, vector data for stimulusTable is editable for enz_cplx delete and move is not allowed so removed the icons
      6882e0b some more colors to ignore which are light
      faad938 If compartment is moved,then object is move then, movement of object with respect to qtscenecoro-ordinates was not moving correctly that is correctly, in KKitOrdinateUtil: pygraphviz:- instead of larrow for reaction I have circle for now, if one needs to save the image of the model loaded
      0f0674d small cleanup
      0ab70d7 cleaner way to set co-ordinate with round trip
      49a3f9c time being removing import sbml
      0622266 instead of pygraphviz_layout which was dependent on pygrapviz installation using graphviz_layot from networkx itself
      a62e275 MMENZ and cplx connection exist, if MMEnz is moved then arrow to cplx is updated
      ad437db saved sbmlfile return to calling function
      a108d2c Instead of spring_layout using pygraphviz_layout which can be further used for saving the layout image to png format
      624f52b 1.Getting layout co-ordinates to Genesis co-ordinates 2.Automaticlayout done using pyqgraphviz for files for sbml and cspace. 3.Separate messge if missing output for StimulusTable and Function
      db36afc Size of the compartment is cleanedup
      1ef13c9 QGraphicsRectItem when no children, then setRect size is fixed to default size
      
      git-subtree-dir: moose-gui
      git-subtree-split: e49ca7da411f0cc7ad8b62ff077522ef92ba2390
      aca40347
  3. Jun 27, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from c21a557..1e5f537 · 2c8c4dcd
      Dilawar Singh authored
      1e5f537 compartment size is fix for newly built model
      
      git-subtree-dir: moose-gui
      git-subtree-split: 1e5f537644e746420353c4e9ec26d5b08f4262ad
      2c8c4dcd
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from bc510df..c21a557 · 5cf6177c
      Dilawar Singh authored
      c21a557 line color for enzparent and enz is the color of enzparent's bgcolor
      c99de1b model saved to Genesis formate with co-ordinates, with addition pool obj added to existing gensis model and also once can save newly built model to Genesis format
      
      git-subtree-dir: moose-gui
      git-subtree-split: c21a557870de4402a7d4118c3e09507d2f9bdece
      5cf6177c
  4. Jun 26, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-gui/' changes from a3d3a06..bc510df · c8e99801
      Dilawar Singh authored
      bc510df removal of whitespace in target Name
      9eb3039 colormap check
      6884e38 Files with no model will not open pyqt widget, atleast one empty compartment should exist
      c830fa0 Merge pull request #9 from dilawar/master
      e1efc3d Merge branch 'master' of https://github.com/BhallaLab/moose-gui
      9603662 Added suds to the source code, removing a dependency.
      
      git-subtree-dir: moose-gui
      git-subtree-split: bc510df870a692283993da17d0fb5bef67edab25
      c8e99801
  5. May 18, 2016