moose-packages.

build fails.

95fe1a7 Force --install-layout=deb when on debian/ubuntu.

git-subtree-dir: moose-core
git-subtree-split: 95fe1a7b8f24b50d600d5e7c3a1d0171a809b9aa

7ab9e3c Let static page generation fail.
c26d7c7 Build using travis and deploy onto github pages.
feeaf6b Added theme for static pages.
ae1fecb Merge branch 'dirty' of github.com:BhallaLab/moose-examples
c25e57e Passing locally.
2a2db61 Moved the integration to branch 'dirty'
83a516c Test the dirty branch with jekyll.
9667dee Added jekyll to create static page.
742362a Testing Jekyll and travis integration.
9aa4a3d Prepare index.md  file post test.
e885ea5 Modified shell script so it does not hang.
828464a Code to update README.md file with broken scripts.
9a6b3b1 Deploy keys are added. Testing...
74fb0ae Set theme jekyll-theme-minimal
a4e7ce1 Deploy to github pages. Testing.
e3f9a41 Added code to deploy on moose-examples static page.
ab45904 Default timeout is 30 secs [ skip ci ]
3e30131 Added python-pygraphviz to dependencies.
b825107 Added python-scipy on travis.
73d8bff Merge branch 'master' into traub_2005
60a9f7d Update README.md
4d30457 Updat...

a13dbd9 Better formatted output on running tests. These tests are moose-examples scripts which are known to pass.
1409792 Fixes to debian related python install. When --prefix=/usr is given, its installs in site-packages rather than dist-pacakges.
4f3e773 If for some reason matplotlib is not imported successfully, disable kkit import.
4f6f8b1 Fixes to debian related python install. When --prefix=/usr is given, its installs in site-packages rather than dist-pacakges.
7771173 Merge branch 'master' of github.com:BhallaLab/moose-core
8fff67d Refactoring in cmake file.
3e1e043 Minor changes to test script: Dont wait till test is over to print which test is being executed.

git-subtree-dir: moose-core
git-subtree-split: a13dbd9f31f93d915faee59f440cfe6bbc8ce428

1cbe2f063 __version__ = version( ) is both python2 and python3 compatible.

git-subtree-dir: moose-core
git-subtree-split: 1cbe2f06372d760333681952d6f81e2087c90aac

37bf0cc This might pass with upcoming release 3.1.3.
feef205 Merge branch 'master' of github.com:BhallaLab/moose-examples
c41af29 import fix to another file.
2d30a30 Output comparision of GPU & CPU (#26)
7295a8f numpy.array changed to np.array
664f843 Maximum timeout is 1m for all script.
0458697 Fixes to one more script. Error due to merge conflicts.
27fddec Updated script.
0694972 Run scripts now launches 8 process in parallel.
15d3aa7 Merge branch 'master' of github.com:BhallaLab/moose-examples
62d6c58 Enabled trap in bash script. Kill running test when user presses ctrl+c.
65fb8a8 Added beta cmake based test flow.
987c3fb Moved CMakeLists.txt to _travis folder. Old bash style build system is sufficient.
d4a081f Removed one more duplicate file.
9b13403 Removed duplicate files.
98b5eb0 Fixes to script. Runs fine now.
c42aa93 One more fix.
626221e Removed merge conflict.
f1b0bc4 Fixed one more script to make it work.
09ca09e Merge branch 'master' o...

d1130b7 Merge branch 'master' of github.com:BhallaLab/moose-core
967ac3b Added VERSION info moose.version( ) or moose.__version__ returns the version. It was lost somewhere in rrefactoring the code.
457850e Added version( ) and __version__ string.
2625fd0 Added `moose.test` to test `moose-examples` online (#189)
2a822a2 Added assertion in test case and remove import of matplotlib. BhallaLab/moose#221.
2484214 absolute imports are forced with python2 as well.
6c92901 All tests passes locally with python3.
bd78e14 Fixes to import statements.
5c3811e Print time information as well.
a7e715c Inbuilt moose.test( ) functions to run moose-examples. BhallaLab/moose-core#184.
c424e0d Fixes to chemUtil import.
f29e35e Merge branch 'master' of github.com:BhallaLab/moose-core
087aad0 moose.Compartment -> moose.element( ) in couple of more place. One more (#187)
d618fe6 Merge branch 'master' into master
4aca08a Merge branch 'master' of github.com:BhallaLab/moose-core...

ba97d4cc0 Merge commit '0014d826'
6aac85bad Follow up fixes to calcium-hsolve  (#221)

git-subtree-dir: moose-core
git-subtree-split: ba97d4cc05425dc8b8b42ee6f8976989e229a144

git-subtree-dir: moose-examples
git-subtree-split: cd2a2b99b4aff3a581bfbfc5786ff9504f0f2cb8

git subtree.

052318cb4 [skip ci] Moved git precommit script into script. if someone wants to activate it in her repo, rename it to .pre-commit-config.yaml and enable it
d15e77649 Removed legacy makefile #180. These appeared again because of push from subtree in moose repo. Sigh!
ed708e01b No-longer supporting Makefile based old flow on travis.
bea1f4a9d Integrated test script from PR BhallaLab/moose#218 . I need to confirm if results are correct.

git-subtree-dir: moose-core
git-subtree-split: 052318cb48027ca0c401a13be9fddd2b0d5a66b7

* Fix broken assertion

* Add volume calculation of DifShells and DifBuffers

Volume needs to be calculated before a diffusion message with calcium concentration or buffer concentration is obtained. Volume is calculated at reinit and sometimes a diffusion message is received before the reinit resulting in a division by volume of zero. Due to that initial concentration in some difshells and difbuffers is not correct.

* Add sending current message at reinit of channels

In HHChannel change access of functions inherited from ChanCommon.

git-subtree-dir: moose-examples
git-subtree-split: 3a960983fe23dad8e0b34883e61510d05a2f3b2a