270c880 Search numpy path in cmake are fixed for snapcraft.

git-subtree-dir: moose-core
git-subtree-split: 270c880c3a3005c3ed1000a87069a0f6bb1bdb0f

7054325 mooseaddChemSolver is needed in loadSbmlModel file
6116c7e Indentation cleanup
9fd501a conflict cleanups
fe297f6 indentation correction
2b24c64 indentation correction
0e329d5 Merge branch 'master' of http://github.com/BhallaLab/moose-examples
7ce262e corrected indentation
0f1e722 Resolved merge conflict
0ff3b05 temp deletion

git-subtree-dir: moose-examples
git-subtree-split: 705432541ca38b6bd082bec1b1fc3e7809b4b32a

69062d9 For crossComptSimpleReac a temp fix so that segfault doesn't occur, rest cleanup
729f216 deleted unwanted files and added new files
045aa11 Fixed assert by Upi
2b16c59 Deleted temp files.
3881f8a khali khali
97599aa Fixed docstring on example.

git-subtree-dir: moose-examples
git-subtree-split: 69062d9340a032a32f316eed69f914e486c19171

7318878 cleanups
9b83291 Merge branch 'master' of github.com:BhallaLab/moose-examples
2f46ad0 Convert u'ABCD' to 'ABCD' to probably fix the python3 issue on travis. Works fine with python3 on ubuntu 16.04/Debian8.
6232b3a Send email to malav if build fails.
4a92db2 Merge branch 'master' of github.com:BhallaLab/moose-examples
4800cd6 Adding python-libsbml to dependencies.
c045972 Fixed second script as well.
e927a88 Merge branch 'master' of github.com:BhallaLab/moose-examples
626afb8 Added a hack to make this script work with both python3 and python2.
24fdc9e Indentation for python3
e9e5d92  Using force-yes with -y
3c60a82 Upi fix the assert error
ca2d409 Upi cleaned up the file
a9ddced Merge branch 'master' of https://github.com/BhallaLab/moose-examples
b4715d0 First commit.
2c4fa33 This is removed b'cos Rdesignuer does the job
4ca1f6d missing closing braces
d120484 small correction for input eval with is str
18990fd enter key replaced to zero, as f...

669b981 VERSION conflict file is added
29362b6 Merge commit '628138cb'

git-subtree-dir: moose-core
git-subtree-split: 669b981fd06bf9b0919dca08cf87505c2f411802

6104940 units added to k1,k2,k3
a3a80bf Using force-yes with -y to avoid problem with gpg keys. Probably breaking due to policy change in apt install.
c994d93 one more attempt -y is removed
b869143 one more attempt expired key
a172670 checking with travis expired key
8ee7c22 checking with travis expired key
a208321 travis has a problem installing moose with -y opition trying this
ff92eb5 print stm with python3 and changes made WRT to pool and bufpool with isBuffered flag
744f262 isbuffered is editable and if value is set/unset
a46cec9 cleanup in demo, filemenu links

git-subtree-dir: moose-gui
git-subtree-split: 61049405f17b22f27c74e7834dc1b2cfbab61699

c15c1b1 Changes to testSynapse so it can compile in DEBUG mode. Issue #175.
e4caa2f Merge branch 'master' of github.com:BhallaLab/moose-core
f99cd77 Removed VERSION file .. again.
7646e6b Python3/python2 compatible import statements.
b77448d Removed VERSION file from source.
97e1a25 Fixed broken test in synapse/testSynapse.cpp file
eb4eeb2 Install python3-numpy using pip on travis. Another failure is with synapse tests setResponseScale and setWeightScale ; these functions are not available.
1998b5f Fixes to python3 import .
22849ab Find python3 on travis.
f5870c9 missing parentheses for print stm
17462d1 Merge branch 'master' of https://github.com/BhallaLab/moose-core
9471341 Group's with annotation is written and read from SBML model
5ab33ad Put SparseMatrix access functions into SparseMsg
46d80cc All default units are added, as some of the simulator requires all the units to be specfied, km unit is defined, group and annotation to the group (compartment and color) is added
b76929f Find gsl header as well.
4df3c47 If user set the GSL_ROOT_DIR then do not search in system dir.
1ef020e Always use private muparser.
abfa2c8 Merge branch 'master' of https://github.com/BhallaLab/moose-core
ff7bf04 Moved isBuffered field from Pool to PoolBase.
c470f10 group information is populated as per SBML rules under listofGroups instead of annotation
70c1e8b clean up in documention
98c5a76 Hopefully description given for merging the files will be clear to user

git-subtree-dir: moose-core
git-subtree-split: c15c1b1b41e429e96ea769c85c105e6167c68ffa

little bit change in docs/

434c478 qMerge branch 'master' of https://github.com/BhallaLab/moose-core
425d8c8 writeKKit: checked if matplotlib is install before importing, moose.py:removed all unwanted check's on genesis_support and sbml_support
0791eb5 Fixes to SeqSynHandler
51a3a30 Moved Pool::increment, decrement and nIn to PoolBase for uniformity with Solvers. Dummy functions except in Pool and BufPool
1c9a9df group info is added to plot
03dbc2c While connecting table for plotting, a check is made to see if its pool
fdc4924 Cleaner way to replace the string
4f92820 libsbml spell corrected
22a276d unwanted print statement cleanup
2c48b1c reading group information from the SBML if exist into moose
e68a509 spell correction
8deaed8 switched from new to old to old to new while providing the files for mergering
ef9edd1 clenup while loading model and solvers are deleted
c2383e2 python3 compatibility with print statement
4ac79b1 Function cleanup while mergering and path cleanup
6fd5ed6 chemUtil and merge folders also needed to copied while using "make install" while using cmake
caaafc9 Fixed test script for python3. Removed VERSION file. Pull request BhallaLab/moose#206 .
a9a8344 Merge commit '7c713058'
6d907ee Script testing DifShells
0dd5cd6 Merge commit 'a5122cfb'
4fc5760 Fixed docstring on example.

git-subtree-dir: moose-core
git-subtree-split: 434c47885637c72d820f92914660a679b34c0301

2a1f94f modelRoot is cleanup for plotting if its comes from genesis or sbml, cleanup in networkx clean while import graphvizlayout
9d55f14 Function can be now on pool class also, and networkx need not to be checked for version for using graphviz_layout, import from network.drawing took care off.
35fb3ac If python-libsbml libs in not found, gui was failing to report which is fix here
34df1fb found a way to use networkX graphviz_layout directly using a importing lib, now no need to check networkx version
7b160c2 corrected indentation
e3e5d2e Merge commit 'f0fd0e53'
a89f6b3 BhallaLab/moose#204.

git-subtree-dir: moose-gui
git-subtree-split: 2a1f94f4be0d4643956232d2eed290b649f12a71

Documentation merge