d5b330dc02 Merge pull request #296 from hrani/master
5a606df86c Merge remote-tracking branch 'upstream/master'
ce545cf507 Rdesigneur updates (#295)
9869046490 Merge branch 'master' into master
753b189063 changes made after fixXreacs is moved from python to python/moose for package
5eca1a3620 moved fixXreacs.py from python to python/moose for packaging, changes made to get fixXreacs files
3a519cec39 mooseAddChemSolver and mooseDeleteChemSolver is meant for chemical models only (#292)
9ba0e85532 check for enz parent is done by neighbors['enzDes'] rather than enz.parent and if enzyme parent is not pool then raise an exception
161c475e2c Merge branch 'master' into master
f9d869da24 Merge pull request #294 from upibhalla/master
a76dd524b4 Merge branch 'master' of https://github.com/BhallaLab/moose-core
c0d5ba6d9b Added plot y limits to rdesigneur
5fa7226e60 clean up modelRoot while printing
3c6972aae3 mooseAddChemSolver and mooseDeleteChemSolver is meant for chemical models only, a check is made to see if modelroot has just cube/CylMesh
3790376c3e Merge pull request #291 from BhallaLab/dilawar-patch-2
c52740323a Update README.md
5843c73ab5 Merge pull request #289 from upibhalla/master
e3baee2dce Merge branch 'master' of https://github.com/BhallaLab/moose-core
7a1b0d8ff6 Test xreacs (#287)
869522d04c Merge branch 'master' of https://github.com/BhallaLab/moose-core
bb274ee43c loadmodel with add_delete_chemSolver (#288)
7d563c7c23 Merge branch 'master' of https://github.com/BhallaLab/moose-core
637d2233a1 setting up dsolver and by passing loadModel from moosemodule.cpp to m… (#277)
9f5a2697f6 Merge branch 'master' of https://github.com/BhallaLab/moose-core
3a8489c475 All random number generators are based on c++11  (#280)
8e29d8eaa7 Minor updates to rdesigneur waveplotting
46718b9c04 Added wavePlot option to rdeisgneur.
506067669c Minor fixes to rdesigneur for setting up stims
5ab1a3c621 Merge branch 'master' of https://github.com/BhallaLab/moose-core
ea487f3ee0 Updated rdesigneur so it can handle a chem system with only a dendrite and spine compartment, no PSD.
7c321bfe94 Merge pull request #284 from upibhalla/master
d9bd29c97d Fix for units of permeability of ConcChan, as computed in Dsolve.cpp. Now it is 1/(mM.sec).
3056c917fe Merge branch 'master' of https://github.com/BhallaLab/moose-core
ae8f2336ce Fixed bug with NeuroMesh
9271d0ba22 Fixes to ReadKkit, Dsolve, rdesigneur to handle EndoMesh to insert in neuronal geometries.
f4ba9362e4 Intermediate save of rdesigneur with partial changes for handling endoMesh. Works with old examples, not tested for EndoMeshes

git-subtree-dir: moose-core
git-subtree-split: d5b330dc02ed938fcb7cff95d8ae0e2cd388d0ea

891f2f8 Removed trailing spaces from code by pre-commit hook utility.
0ed2535 Cherry-pick "Added connectionList field to SparseMsg to allow direct control over connection matrix. Some sanity checks in SparseMatrix to go with this"
d62d10d The bug on travis is still not bypassed. If this does not work, disable DOQCS tests on OSX.
618b4d6 Install moose on osx as well. Prerequisite to test DOQCS.
f717f82 Merge branch 'master' of github.com:BhallaLab/moose-core
908820e Lets see if this is a good workaround travis issue travis-ci/travis-ci#6522.
e251f53 Lets see if is a workaround fixes the OSX bug.
4ff7cff Hopefully this will fix issue on travis-osx build failure. Related to travis-ci/travis-ci#6522.
590c09e Don't use timeout in script. So that we can run on macosx as well. Removed timeout command from script. Now it can run on OSX as well.
e2f8afd Only test doqcs on LinuxOS, not on MacOSX.
dc7b55a Fix to travis-ci/travis-ci#6307.
54b8471 Merge branch 'master' of github.com:BhallaLab/moose-core
18c8759 Test docqs agains gsl version/python2 moose-core.
d6ca9cc Fixes by pre-commit hooks. - Removed trailing whitespaces automatically. - insert * coding - utf8 * line on top of each python script automatically.
d4a6939 Using version v0.8 now.
f944afe Added pre-commit pip install pre-commit --user to activate it.
030bfe0 Merge pull request #195 from dilawar/master
d00a5d1 All tests are passing and new code is protected by appropriate macros.
1959771 Merge branch 'async' of github.com:dilawar/moose-core
0f6aba0 Merge branch 'master' of github.com:BhallaLab/moose-core
ac0a4cd Added note on what to do.
b3bf54e Slower version but results are same.
6bc71c9 Async version is slower (80sec vs 70 sec).
d838267 asyncing clock is not producing great results.
eeaafbf Implemented first parallel version.
166f84e Equivalent serial code which can easily be called from std::async now.
e09a0c1 Merge pull request #194 from dilawar/master
d2d1097 Added MACRO to integrate serial and parallel version.
e68acd6 This is good but do parallelism at Clock.cpp
4cebbca Rdesigneur has python3 default import : absolute_import.
f431cca Merge branch 'master' of github.com:BhallaLab/moose-core
85afa6d Some changes to Ksolve. Still seg-faults.
47e023e Time to test the Gsolve performance when threads are enabled.
2bbfd4f Commented out code appropriately.
91c2da6 moose.test( ) is added not cmake but not enabled. Enable them once all scripts are fixed in moose-examples.
a1699fc Optimized GSolve with default 2 threads.
00a9d9e Removed the debug message. Lets check it now. By default it should be not slower than the default version.
7700c07 Fast Ksolve with 2 default threads.
d154eb3 Parallel ksolve.

git-subtree-dir: moose-core
git-subtree-split: 891f2f8bf7359d61f186c3792c6f12b61d8c0afb

052318cb4 [skip ci] Moved git precommit script into script. if someone wants to activate it in her repo, rename it to .pre-commit-config.yaml and enable it
d15e77649 Removed legacy makefile #180. These appeared again because of push from subtree in moose repo. Sigh!
ed708e01b No-longer supporting Makefile based old flow on travis.
bea1f4a9d Integrated test script from PR BhallaLab/moose#218 . I need to confirm if results are correct.

git-subtree-dir: moose-core
git-subtree-split: 052318cb48027ca0c401a13be9fddd2b0d5a66b7

git-subtree-dir: moose-core
git-subtree-split: fe77059f98c5a6cab2e106f78b7eb505f4f62850