38da92b048 Fixes to bad-merging.
812d2d97f8 Merge commit '320e525a'
6fc726e560 All changes from previous repository. No new file is added here.

git-subtree-dir: moose-gui
git-subtree-split: 38da92b0481f53ffd2cdc75d8f7aec49408dc4ae

49779ba730 As per Upi suggestion, co-ordinates are reprocessed for genesis file (yaxis is negated) at loading time so that, at the interface level co-ordinate are played around independently and while saving scene co-ordinates are save.
1f32b418d2 Kd is calculated for second order reaction only and value is displayed in object editor,Notes header is added, and unit for Kd is added in default.py
254d1f077a Enzyme can't be connected for second order reaction
3038c31d1a missing import math
355d721e4f added libsbml and moogli is removed
0343ce3e11 Added a Model information, like number of compartment,group,pool,function,reaction etc when model is loaded for the first time

git-subtree-dir: moose-gui
git-subtree-split: 49779ba730bbbb214728c86d3550fc2b27d8ef24

d282884 specific math functions are imported
16439cc checked for Qt_Version and icon takes config.settings
cecb74c resize qObject if change in text size

git-subtree-dir: moose-gui
git-subtree-split: d282884250997aa6cc1154b6ba93fee6c3ccc630

6104940 units added to k1,k2,k3
a3a80bf Using force-yes with -y to avoid problem with gpg keys. Probably breaking due to policy change in apt install.
c994d93 one more attempt -y is removed
b869143 one more attempt expired key
a172670 checking with travis expired key
8ee7c22 checking with travis expired key
a208321 travis has a problem installing moose with -y opition trying this
ff92eb5 print stm with python3 and changes made WRT to pool and bufpool with isBuffered flag
744f262 isbuffered is editable and if value is set/unset
a46cec9 cleanup in demo, filemenu links

git-subtree-dir: moose-gui
git-subtree-split: 61049405f17b22f27c74e7834dc1b2cfbab61699

2a1f94f modelRoot is cleanup for plotting if its comes from genesis or sbml, cleanup in networkx clean while import graphvizlayout
9d55f14 Function can be now on pool class also, and networkx need not to be checked for version for using graphviz_layout, import from network.drawing took care off.
35fb3ac If python-libsbml libs in not found, gui was failing to report which is fix here
34df1fb found a way to use networkX graphviz_layout directly using a importing lib, now no need to check networkx version
7b160c2 corrected indentation
e3e5d2e Merge commit 'f0fd0e53'
a89f6b3 BhallaLab/moose#204.

git-subtree-dir: moose-gui
git-subtree-split: 2a1f94f4be0d4643956232d2eed290b649f12a71

2ba6bd5 cleanup
d0f5918 replace writeKkit to moosewriteKkit
cb067ac correct from writeKkit to mooseWriteKkit
6b1bff4 Ubuntu16.04 with networkx and pygraphviz has some bug, for now small fix, automatic layout will be done spring_layout format
dbe6875 Update .travis.yml
8a71426 Update README.md
fcbacd5 Added travis file to moose-gui.
ddcfbdc Removed shebangs from python scripts.
d5cf170 Fixed the address of Free Software Foundation Inc.
b88d5cc Merge commit 'aca40347'
e0cea9f Squashed 'moose-gui/' changes from 1ef13c9-1ef13c9

git-subtree-dir: moose-gui
git-subtree-split: 2ba6bd5d8e6b022edf3f3aa1a567462ab7ddf6ed

e49ca7d Changes Function symbol to summation symbol, objectedit.py function expr is not editable as this summation of pools, some cleanup with colors selection,Function which is now just summation object, set's up setN for output as input is nout
328b8f5 for now function output connected to pool via setConc message, but there is "increment" which depend on the function input this will be fixed later
16075b3 cleanup with colormap string from genesis file
aa377ed resetup for multicompartment model before setting up the solver
26d2be7 Changes made are related to functions which now doesn't need parent as pool but if exist like in case of genesis then it displays as its, setsolver: setting ticks to table, 18 is not required as its set default when table is created
7ad2bb9 plot are saved to csv forms
20a76af some more cleanup
653b464 added units for Km, kcat is added which display in object editor
cbf2c5e added units for volume which display in object editor, vector data for stimulusTable is editable for enz_cplx delete and move is not allowed so removed the icons
6882e0b some more colors to ignore which are light
faad938 If compartment is moved,then object is move then, movement of object with respect to qtscenecoro-ordinates was not moving correctly that is correctly, in KKitOrdinateUtil: pygraphviz:- instead of larrow for reaction I have circle for now, if one needs to save the image of the model loaded
0f0674d small cleanup
0ab70d7 cleaner way to set co-ordinate with round trip
49a3f9c time being removing import sbml
0622266 instead of pygraphviz_layout which was dependent on pygrapviz installation using graphviz_layot from networkx itself
a62e275 MMENZ and cplx connection exist, if MMEnz is moved then arrow to cplx is updated
ad437db saved sbmlfile return to calling function
a108d2c Instead of spring_layout using pygraphviz_layout which can be further used for saving the layout image to png format
624f52b 1.Getting layout co-ordinates to Genesis co-ordinates 2.Automaticlayout done using pyqgraphviz for files for sbml and cspace. 3.Separate messge if missing output for StimulusTable and Function
db36afc Size of the compartment is cleanedup
1ef13c9 QGraphicsRectItem when no children, then setRect size is fixed to default size

git-subtree-dir: moose-gui
git-subtree-split: e49ca7da411f0cc7ad8b62ff077522ef92ba2390

1e5f537 compartment size is fix for newly built model

git-subtree-dir: moose-gui
git-subtree-split: 1e5f537644e746420353c4e9ec26d5b08f4262ad

c21a557 line color for enzparent and enz is the color of enzparent's bgcolor
c99de1b model saved to Genesis formate with co-ordinates, with addition pool obj added to existing gensis model and also once can save newly built model to Genesis format

git-subtree-dir: moose-gui
git-subtree-split: c21a557870de4402a7d4118c3e09507d2f9bdece

bc510df removal of whitespace in target Name
9eb3039 colormap check
6884e38 Files with no model will not open pyqt widget, atleast one empty compartment should exist
c830fa0 Merge pull request #9 from dilawar/master
e1efc3d Merge branch 'master' of https://github.com/BhallaLab/moose-gui
9603662 Added suds to the source code, removing a dependency.

git-subtree-dir: moose-gui
git-subtree-split: bc510df870a692283993da17d0fb5bef67edab25

git-subtree-dir: moose-gui
git-subtree-split: a3d3a067901ee0f1f183f50f667a98bebf3e447f