removed pyrun1.py documentation as it is exactly the same as pyrun.py.

updated vec information in quickstart to reflect actual ouput.

Recovered rdesigneur tutorial. Modified file by adding extended contents, commented out incomplete sections. Modified rdesigneur snippets page title to 'more rdesigneur examples' instead of just 'Rdesigneur'

enabled.
May be some other test to test the gui without lauching it?

better formatting at the top of readme.

Quick link to packages and documents.

since -X is not enabled.

92dd345eb5  clean up

git-subtree-dir: moose-gui
git-subtree-split: 92dd345eb549c51dfd6a007675d09f214103d416

renamed it.

[skip ci]

cmake.

Conflicts:
	moose-core/python/setup.cmake.py

bda9742 Merge pull request #236 from upibhalla/master
86751f2 Added more accurate error messages to ZombieEnz for reporting missing messages during solver setup
5d93f75 Merge pull request #233 from upibhalla/master
cc47a2d Merge branch 'master' into master
a7ac8f4 Merge pull request #234 from BhallaLab/fix_travis_nov_30
5a08c96 pip is renamed to pip2. This commit passes on local machine.
bf8585d Possible fixes to travis build failure on osx.
f61a591 Added hack for channel not scaling when compartment size is scaled. Checks for child object called scaleFormula.
dff5731 Merge branch 'master' of https://github.com/BhallaLab/moose-core
7f0eb4b Merge pull request #231 from BhallaLab/prefix_python3
1d99906 Fix for spine ordering. Added capability to do unordered_map which may help with some of the performance issues during setup.
296c030 moose-core does not handle debian layout anymore. This should be handled in BhallaLab/moose.
0433574 commenting out changes introduced by 985af4e. Reopened BhallaLab/moose#224.

git-subtree-dir: moose-core
git-subtree-split: bda97426c899b2f366d08bdf30cf0f69876c9567

Updated installation documentation with new mac osx brew install procedure. Made new section for OSX for consistency of format.

Recovered quickstart section in html, added tutorials placeholder and implemented rudimentary integration between doxygen and sphinx (dependecy on breathe sphinx extension)

found.

33d4803ee Merge pull request #228 from upibhalla/master
c9e9fa6fd Update test_muparser.py
419661b6e Update test_muparser.py
7c8ca61a6 Merge branch 'master' of https://github.com/upibhalla/moose-core
b13fc98cc Fix for muparser tests
7eefdca47 Merge branch 'master' into master
1ad271b07 Merge pull request #229 from dilawar/master
30fe94cda Optimizations for rdesigneur in _parseComptField function
d862de4e9 Merge branch 'master' of https://github.com/BhallaLab/moose-core
3eef327f1 Added instructions on what to do post-build.
985af4e11 Fixes BhallaLab/moose#224 and BhallaLab/moose-core#230 .
917d68db0 Merge branch 'master' of github.com:BhallaLab/moose-core
586d48a62 Merge pull request #222 from hrani/master
3c7ce10fa New line added
e7c8d0e81 Merge branch 'master' of http://github.com/hrani/moose-core
7ce91a0f2 import rdesigneur.rmoogli as rmoogli is added at init file, otherwise script that uses rmoogli gives and error "NameError: global name \'rmoogli\' is not defined"
fd5f360d6 Merge branch 'master' of https://github.com/BhallaLab/moose-core
eb76ab120 Fix to Neuron.cpp handling of messages between Ca channels and Ca_conc objects.
f9f188513 Merge branch 'master' into master
67c9b0a85 Disabled seg-fault causing test on python3. Runs with python2.
cd40023f2 disable seg-fault causing function on python3.
761172460 Merge branch 'master' into master
946cb77e7 call plotDEGF only once.
47f6803df iteritems( ) is no longer supported by python3; replacing it with items().
f447f0d35 Passes with python3.4 .
1d26f38c2 import matplotlib in rdesigneur.display only when display is called.
4b56d7a66 dependencies are handled by cmake now. Removing scripts.
20c131a3f Added field Table::plotDump to substitute for the Table::xplot function which has problems with Moose interface to Python.
2c7b9efc9 Merge branch 'master' into master
8005f2f04 loading SBML was commented, now uncommenting while mergering

git-subtree-dir: moose-core
git-subtree-split: 33d4803eed211af61fd8b6f45d71e8675f77f951