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  1. Nov 20, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from bd86fb5..3f8c345 · 04170cb4
      Dilawar Singh authored
      3f8c345 Make sure all python scripts are python3 compatible. BhallaLab/moose#202.
      937fdf4 Allow failure with clang compiler. python-libsbml module doest not get build with clang.
      b7f1834 Merge commit '1680bac6'
      d28a94d Changes to cmake file so that we can find the correct static library.
      67c0d52 Fix a development warning in cmake.
      9bb0aa9 Removing shebangs from the python scripts. These scripts were never called as standalone executables.
      3b2296b A test commit to package hdf5-devel BhallaLab/moose#201.
      06adf59 Fixed another typo in FindGSL. Library list was converted to string.
      3893081 Fixed a typo in FindGSL file.
      b635a2c FindGSL also looks for GSL_VERSION now.
      6bcc61d Fixes to travis failure.
      88d49cb Updated CMake and FindGSL.
      0fb10a5 Fixes to extension bug.
      a9b9f2a Some fixes to static library dependencies [skip ci]
      6614991 Cleanup in cmake files. Using bash scripts to generate subprojects. This way I can handle enviro...
      04170cb4
  2. Nov 19, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 6a6bcc1..bd86fb5 · 1680bac6
      Dilawar Singh authored
      bd86fb5 Update INSTALL.md
      3602353 Update README.md
      f96dbda Merge pull request #155 from dilawar/master
      50d720b Merge branch 'master' into master
      b408e36 Instead of simple sin/cos use fmod and divide method. Sin/cosine functions gets value of 1 or many points near the maxima when simulation time is large (T for sin/cos). This changes fixes that.
      
      git-subtree-dir: moose-core
      git-subtree-split: bd86fb53a865dce7d482e21f959513e5621b1062
      1680bac6
  3. Nov 14, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 9eeca0c..6a6bcc1 · d0a6060b
      Dilawar Singh authored
      6a6bcc1 Python module can also use VERSION file generated by CMAKE. Copy to build directory for not-in-source builds. BhallaLab/moose#200.
      7805364 Failsafe mechanism in VERSION reading script.
      
      git-subtree-dir: moose-core
      git-subtree-split: 6a6bcc15556a58e08c24203599c3c84837eb65bd
      d0a6060b
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 14cf2df..9eeca0c · b5a7c2e2
      Dilawar Singh authored
      9eeca0c Fixed a typo in setup.py file. Due to which installation was failing without any warning.
      
      git-subtree-dir: moose-core
      git-subtree-split: 9eeca0ca8135fbf3c8fe7dd65ce408681b1e4605
      b5a7c2e2
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 343cb02..14cf2df · 273124ec
      Dilawar Singh authored
      14cf2df Fixed the setup.py file. Use absolute path for script to determine absolute path of VERSION file.
      
      git-subtree-dir: moose-core
      git-subtree-split: 14cf2df3a65456c6b4ce67b2d34110fd3400c982
      273124ec
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from ed5f015..343cb02 · 8bfef2e6
      Dilawar Singh authored
      343cb02 Fixes to  VERSION issue BhallaLab/moose#200.
      835bf9a Added a version file.
      
      git-subtree-dir: moose-core
      git-subtree-split: 343cb02705b0874ad0035eea648019420475f7ed
      8bfef2e6
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from c2c32b9..ed5f015 · 6c8f2012
      Dilawar Singh authored
      ed5f015 Update README.md
      a4a5cc1 Fixed linking error compiling with new gcc.
      9a82850 Merge commit '912c550e28d1fccfd310c5968a07ae38dc60c698'
      0fb7431 Added option to explicitly set CMAKE_DL_LIBS flag (-ldl).
      da5fd97 Merge commit '9296cecdffbe647a929af4792360adbc3768e4bd'
      093e681 Disabled unused part of code #86.
      c698620 Merge commit '11af2e3b2ecd7b31aefa957412abb5b64ce54014'
      57714ae Fixes to VERSION bug. See #BhallaLab/moose#200
      59512e1 Merge commit '1d69d002939cc4b270ff4fc51e8a4800a6fbdad1'
      3adb8b3 removed a print statement
      9aa9405 Use git to generate version when not passed via command line. BhallaLab/moose#200 .
      2f8a48e Merge commit '18331bb5a2f6aa2918a4e49b178297a79e3c791b'
      c9714fd Merge branch 'master' of github.com:BhallaLab/moose-python-package
      df2186a Merge commit 'ec45fa526f0e2de2b49bf05f3f7f8ddb1c7ff463'
      
      git-subtree-dir: moose-core
      git-subtree-split: ed5f0151b5c12301b826e47e5a1daaaa7044a714
      6c8f2012
  4. Nov 07, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from a15a538..c2c32b9 · 96580978
      Dilawar Singh authored
      c2c32b9 Before tagging runing with clang.
      1cc19f1 updated runtime to annotation field in moose
      3ad9558 runTime and solver type is read from xml file to moose, cleaning in names
      5de1f05 function output to pool object set's "setN" as input is "nOut"
      ae24a3d Merge branch 'master' of https://github.com/BhallaLab/moose-core
      7b43f70 Fixed Function unzombification for increment messages. Added update for time in Zombie Functions.
      f4310e6 for now function output connected to pool via setConc message, but there is "increment" which depend on the function input this will be fixed later
      f286dca removed writekkit.py duplicate file
      6d299eb replace all the obj under /kinetics or /kinetics/group which is required by genesis format
      a6dad52 Merge branch 'master' of https://github.com/BhallaLab/moose-core
      0ddbd21 Gsolve updates to monitor number of reac events. Stoich updates to avoid crashes when handling edge cases without objects in model.
      2ab410d function can be conn...
      96580978
  5. Jun 26, 2016
    • Dilawar Singh's avatar
      Squashed 'moose-core/' changes from 1318029..a15a538 · 2af833a0
      Dilawar Singh authored
      a15a538 Merge pull request #131 from dilawar/master
      1800283 Merge branch 'master' of github.com:dilawar/moose-core
      2ad812f Rdesigeur by sarthak,
      8e87707 Fixed the streamer test.
      e62ec09 Merge remote-tracking branch 'bhallalab/master'
      002edb6 Fix to BhallaLab/moose-core#130.
      d7ebbe7 No need to have header name in inverted commas.
      414a8d9 stimulustable is check and some more correction
      343a08a First version of model merging pools and reaction are done
      943f96f  clean up in notes field
      f2b71f5 Merge branch 'master' of http://github.com/BhallaLab/moose-core
      c742934 kkitUtil: check to see if the color goes beyond genesis color Sequence, _main.py: eliminated enzyme cplx pool to genesis under compartment
      9aca1c1 Merge pull request #128 from dilawar/master
      322093e Streamer uses name of the table whenever possible.
      5be9eb4 Added getName, setName to table. If these are set, use them in Streamer class to write the header of csv file.
      f9178d2 Merge branch 'master' o...
      2af833a0
  6. May 18, 2016