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Sahil Moza
moose
Commits
b9d2394b
Commit
b9d2394b
authored
8 years ago
by
Dilawar Singh
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# Building and installing moose
## Download the latest source code of moose from github or sourceforge.
$ git clone https://github.com/BhallaLab/moose
$ cd moose
## Install dependencies
For moose-core:
-
gsl-1.16 or higher.
-
libhdf5
-
libsbml (optional)
Make sure that `libsml` is installed with `zlib` and `lxml` support.
If you are using buildtools, then use the following to install libsbml.
- wget http://sourceforge.net/projects/sbml/files/libsbml/5.9.0/stable/libSBML-5.9.0-core-src.tar.gz
- tar -xzvf libSBML-5.9.0-core-src.tar.gz
- cd libsbml-5.9.0
- ./configure --prefix=/usr --with-zlib --with-bzip2 --with-libxml
- make
- ctest --output-on-failure # optional
- sudo make install
For python module of MOOSE, following additional packages are required:
-
Development package of python e.g. libpython-dev
-
python-numpy
For python-gui, we need some more addtional packages
-
matplotlib
-
setuptools (cmake uses it to install moose python extension and moogli)
-
suds
-
Python bindings for Qt4 or higher
-
Python OpenGL
-
Python bindings for Qt's OpenGL module
On Ubuntu-120.4 or higher, these can be installed with:
sudo apt-get install python-matplotlib python-qt4 python-qt4-gl
## Use `cmake` to build moose:
$ mkdir _build
$ cd _build
$ cmake -DBUILD_MOOGLI=OFF -DWITH_DOC=OFF ..
$ make
$ ctest --output-on-failure
This will build moose and its python extentions,
`ctest`
will run few tests to
check if build process was successful.
If you also want MOOGLI then pass
`-DBUILD_MOOGLI=ON`
. Also see the section
__Building and installing moogli__
for more details about its dependencies.
To install MOOSE into non-standard directory, pass additional argument
`-DCMAKE_INSTALL_PREFIX=path/to/install/dir`
to cmake.
After that installation is pretty easy.
## Install
$ sudo make install
# Building and installing moogli
MOOGLI is subproject of moogli for visualizing models. Details can be found
[
here
](
http://moose.ncbs.res.in/moogli
)
.
MOOGLI dependencies are huge! It uses
`OpenSceneGraph`
which has its own
dependencies. In nutshell, depending on your distribution, you would need
following packages to be installed.
-
Development package of libopenscenegraph
-
[
libQGLViewer-2.3.15-py
](
https://gforge.inria.fr/frs/?group_id=773
)
. Install
instructions
[
here
](
http://www.libqglviewer.com//installUnix.html#linux
)
-
[
PyQGLViewer0.10
](
https://gforge.inria.fr/frs/?group_id=773
)
(
first
install
libQGLViewer-2.3.15-py) and untar contents.
$ cd / PyQGLViewer0.10
$ python setup.py build # to compile
$ python setup.py install # to install on your system
$ python setup.py bdist # to create a binary distribution
On Ubuntu, following packages should suffice:
$ sudo apt-get install python-qt4-dev python-qt4-gl libopenscenegraph-dev python-sip-dev
libqt4-dev
### Travis
We use
`Travis-CI`
to build MOOSE after every commit. You can see
`.travis.yml`
file in our repository. It has all instructions to build MOOSE on
`Ubuntu-12.04
64bit`
server.
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