Added build script to build all code in one go, modified update-repository to...

Added build script to build all code in one go, modified update-repository to alleviate detached head issue in submodules

build-moogli

+#!/bin/sh
+
+(cd moogli; make build)
+local_site_package_directory=`python -c "import site; print site.getusersitepackages()"`
+mkdir -p "$local_site_package_directory"
+echo "`pwd`/moogli" > "$local_site_package_directory/moogli.pth"

build-moose

+#!/bin/sh
+
+sh ./build-moose-core
+sh ./build-moogli

build-moose-core

+#!/bin/sh
+
+(cd moose-core; make USE_SBML=1)
+local_site_package_directory=`python -c "import site; print site.getusersitepackages()"`
+mkdir -p "$local_site_package_directory"
+echo "`pwd`/moose-core/python" > "$local_site_package_directory/moose.pth"
+

moogli @ 317b31d0

-Subproject commit 9681522f43bbc0dde26f282138e93e5b5b85aa81
+Subproject commit 317b31d00415cc933560531a34ae6673d9ecaab2

moose-core @ 1d6208f2

-Subproject commit af822336e42d4e933f50f664beccadc7a17f058e
+Subproject commit 1d6208f2a5cbe7cc43ac2bfd1edf43c4ee385619

update-repository

@@ -3,4 +3,4 @@
 # This script updates the repository and its subrepositories, recursively.
 
 git submodule update --init
-git submodule foreach '[ "$path" = "moogli" ] && branch=geometry || branch=master; git pull origin $branch; git checkout $branch' 
+git submodule foreach '[ "$path" = "moogli" ] && branch=geometry || branch=master; git pull origin $branch; git checkout $branch; git pull'